Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03196 ATGAAAACGAAACTTCTTCTTTTCATGCTCCTCCTTCTCCTTGTTCTTCACGAACCCATTTGGATCCTTGCCTCATCAGACCCACTTGCTTCCTCCATGCCAGTCCCGGTTTCCTCACCTGAAGTTCCACCCTTTTCTCCAATTCCCACGTCAACAATGGCTGCTTCCTCTCCAGGTATTCTGGTGGGGAGTGAACAGAAACAAATGGATTCACACAAGAAAATGGTAATAGCTTTTGCTGTAGCCAGCACTGCACTTGGTGCTGTCATTTTGTGTGTGTTATGCTTCTGGATTTATTATACCAAGAGTCCTTCAAAACCCAACAGGAAAAACGTTCAAAGCTCAGGCCAAGATGCTGAGAAAGGGCTTGCTTTAGCTCCATTTTTGAGTAAATTCAGCTCTGTGAAGATGGTTGGTAAGAAAGGGTGTGTCCCAATAATTGATTACAAGCAATTAGAAAAGGCTACAGGGAATTTCAAGGAAAGTAACATCTTGGGTGAGGGTGGTTTTGGATGTGTCTACAAGGCTCGGTTGGATGATAACTTGGATGTTGCTGTCAAGAAACTGCACTGTGAAAGTCACCATGCTGAGAGAGAATTTGAGAATGAGGTGGATTTGTTGAGTAAAATTCAGCATCCAAATGTAATTTCTCTACTGGGTTGTAGCAGTAATGAGGATACGAGGTTTATTGTTTATGAGTTGATGCAAAATGGATCATTGGAAACTCAGTTACATGGACCTTCTCGTGGCTCAGCATTGACTTGGCACATGAGGATGAAGATTGCTCTTGATACAGCAAGAGGTTTAAAATATCTGCATGAGCACTGTTACCCTCCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCCATAACCGATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGCACCTTGGGGTACGTAGCCCCAGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTCTATGCATTTGGAGTTGTGCTTCTGGAGCTTCTATTAGGAAGGAAGCCTGTAGAAAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGATCCAAGCTTCCAAACATTTTGGATCCTGTGATTAGGAATACGATGGATCCCAAGCACTTATACCAGGTTGCTGCGGTAGCAGTGCTATGTGTACAACCAGAACCATGTTACCGTCCACTGATTGCAGATGTTCTCCACTCACTCATCCCTCTTGTACCTGTTGAGCTTGGAGGAACACTGCGAGTGTCACAAGTAGTCACACAGCAAGTCTTACATGTTGGTCCGCCTGTGAATTCTAGTCAATGA 1389 0.4334 MKTKLLLFMLLLLLVLHEPIWILASSDPLASSMPVPVSSPEVPPFSPIPTSTMAASSPGILVGSEQKQMDSHKKMVIAFAVASTALGAVILCVLCFWIYYTKSPSKPNRKNVQSSGQDAEKGLALAPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNILGEGGFGCVYKARLDDNLDVAVKKLHCESHHAEREFENEVDLLSKIQHPNVISLLGCSSNEDTRFIVYELMQNGSLETQLHGPSRGSALTWHMRMKIALDTARGLKYLHEHCYPPVIHRDLKSSNILLDANFNAKLSDFGLAITDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNILDPVIRNTMDPKHLYQVAAVAVLCVQPEPCYRPLIADVLHSLIPLVPVELGGTLRVSQVVTQQVLHVGPPVNSSQ. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03196 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Seca8g03196 462 FunFam Protein kinase superfamily protein 126 234 - -
Seca8g03196 462 SUPERFAMILY Protein kinase-like (PK-like) 140 429 IPR011009 -
Seca8g03196 462 Gene3D Transferase(Phosphotransferase) domain 1 235 434 - -
Seca8g03196 462 FunFam probable receptor-like protein kinase At1g80640 235 434 - -
Seca8g03196 462 Pfam Protein tyrosine and serine/threonine kinase 162 391 IPR001245 GO:0004672|GO:0006468
Seca8g03196 462 ProSitePatterns Protein kinases ATP-binding region signature. 165 188 IPR017441 GO:0005524
Seca8g03196 462 SMART serkin_6 159 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03196 462 PANTHER OS01G0750732 PROTEIN 37 433 - -
Seca8g03196 462 Gene3D Phosphorylase Kinase; domain 1 126 234 - -
Seca8g03196 462 CDD STKc_IRAK 165 432 - -
Seca8g03196 462 ProSiteProfiles Protein kinase domain profile. 159 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03196 Seca-Chr8 91175647 91179561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03196 19 375 Receptor kinase-like Gene Family AT1G80640 47.967 3.34e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Seca8g03196 PK_Tyr_Ser-Thr 8.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03196 - - gmx:100812044 746.117