Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03185 ATGGCGTACCACAACCAGCACCTCTCTCAAGACCTACCTCTCCATCATTTCACAGACCAATCCAACTCCTTGCGTTCCATATTACCAGACCAACTACCCTCCTCACCCGACCCTAACTCCAAACCAACCTCCGATCCAAACCACCACCACCCTCTCCAAACCGCACCCAATTGGCTCAACAACGCTCTCCTTCGCACTCACTACACCGACAACAACGACGACGCCACCGTTAACGCTACCAACAACGCCTCCAATTTCCTCAACCTCCACACGGCCTCAGACTCCTCCGCCGTCGCTGGCACTGCAAACCAAACCTCCGGCCAATGGCTCTCCCGCCCGATCCTCCACCGGAACCACAGCGAGGTCATCGATGACGTCGCCGCCGCTGCCGTCGCCGGAGACTCTATCGTCGCCGGCGACAAGGGCGAGGCGGTGGTCGGAGACGTCGACGGAGGCGCCGGCGGGCTGGTGAACTGGCAGATTGGGAGGTGCAAGGCGGAGATTCTGGCGCATCCGCTGTATGAGCAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATTGACGCTCAGTTGGCGCAGTCTCAGAATGTGGTTGCCAAGTACTCAGCGTTTGGACATGGAGCTCAGAACATGGGTGGGGATGACAAAGAACTAGACCAGTTCATGTCGCACTATGTTTTGTTGCTTTGTTCCTTCAAAGAACAATTGCAGCAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGATCAAGTAGATAGTGATGCCAATCTGTTTGATGGTAGTTTGGATGGGTCAGATAACATGGGATTTGGCCCTCTTATTCCTACAGAGAATGAGAGGTCCCTCATGGAGCGAGTGAGACAGGAATTAAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGGCGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAAGCTTGGTGGCAATCACATGCTAAGTGGCCTTACCCTACAGTAAGTTTGATAAATAAGAACTCAGTATTGGCATCACATCATTTTTGA 1191 0.5239 MAYHNQHLSQDLPLHHFTDQSNSLRSILPDQLPSSPDPNSKPTSDPNHHHPLQTAPNWLNNALLRTHYTDNNDDATVNATNNASNFLNLHTASDSSAVAGTANQTSGQWLSRPILHRNHSEVIDDVAAAAVAGDSIVAGDKGEAVVGDVDGGAGGLVNWQIGRCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQNMGGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHAKWPYPTVSLINKNSVLASHHF. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03185 396 SMART ELK_2 330 351 IPR005539 GO:0003677
Seca8g03185 396 MobiDBLite consensus disorder prediction 26 55 - -
Seca8g03185 396 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 381 - -
Seca8g03185 396 SMART KNOX1_2 162 206 IPR005540 GO:0003677|GO:0005634
Seca8g03185 396 SMART KNOX2_2 218 273 IPR005541 GO:0003677|GO:0005634
Seca8g03185 396 MobiDBLite consensus disorder prediction 41 55 - -
Seca8g03185 396 ProSiteProfiles ELK domain profile. 330 350 IPR005539 GO:0003677
Seca8g03185 396 MobiDBLite consensus disorder prediction 272 291 - -
Seca8g03185 396 Pfam KNOX1 domain 165 205 IPR005540 GO:0003677|GO:0005634
Seca8g03185 396 Pfam KNOX2 domain 223 272 IPR005541 GO:0003677|GO:0005634
Seca8g03185 396 Gene3D - 351 388 - -
Seca8g03185 396 Pfam ELK domain 330 351 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03185 Seca-Chr8 90723487 90727480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03185 1 381 Homeobox Transcription Factor Family AT5G25220 64.198 1.34e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03185 - - pcin:129303573 562.762