Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03176 ATGAAATCCAATGCATCTGGGTCTGATATGTCCAAGAGTGATTTGCCTCATATTTTGAGTTCATCTGCAGTCACATTAAGGTCTGGCAAGTCTTCTGACTATGTTATGTTTCCAAAGAATGCTCATACAGACCACAATTTATTTATTGGTGCATTGTCCAGCAAACAAATAACAACTATCCAGGACAATTGCAACATTCCACTAAAAGGTTTTACTGGTATTTCACAAAGCTTGTGTGAACGGGTGAAAAATCAGTTATTGGAATCTAATCTGGCTGCGTATACAACTGCACCAAACATCGGCGGGACTCAACTAGATGATGGTTGTCAGCCTATAACTCCTTTCCTTGATTCTCTAAAAAGGAATGGAAATGTGTTAATTGCTCACTCTCCTACACAAACTCCAACAAGCCTTCTAAAAGAGCATGAATGCATCAAAAAGAAGAATGCAAAGGATTGTCTAGTAGGCAGAGATGCAGCTTCCTCTAATATTGAGCTTAGGCTTGGTCAACCACCTCAGACAGGAAATCCAGTTCAATCATATATAGAACCACCGTTGTTTAATGCCCTTGCCAGTCCACCGAAATTGCAACCACTGAAGCAGATGATTAATAATGCAGACCTTAGACGGGAGGAGGAATTACAGAGTAATTTTAGCTGCACTGATCGATCATTTGAAATGGTTGAAGAACAACCTCAGCTTAAACCAAGGAACTATATGTCTGGTGTTGGTAATGCTTCAGGTGCTGCTAGAACTGAAAATGTGGCCAAGCGTTTATTGTTTTCACCATTTCTACAATTTAATCCTCAACACAAGGGAAAGACAAAAACTAGTCAAAATGTGGTGAATGATGGTGGGCCCATGCACAAGAAACTGCATTCTGAATATAGTACCATGCAGTTTGGTCGTACTAATGTTCTCTATAATAGTAATGGTCACACAGGAAGGCAATTAAATAATTCTGCACCAGGCTCCAATAAATTTTTGGACAATGATAAAGGTGTGAACTTTGCTAAAAACTCTTGTGCCTTAATGAATTCTGAATTTAGAATTAGTGAATTAATGGAATTTGGTTCCATCACAAGAGCTGTTGATGTTAGTGATAGCTGTATTTCAGCTGTTAATGGAAAGATCAATGACTCAAGCTTGCCATCAGATACATCCGTGGGTGCAAACTTTTTGCAAGGTTCAAAGAATGTATCTTCTTTTGGACAAGATAATAATGTGACCTCTGGGACAGCCATTCCATTTGAAGGAATTTTGAAGGGCCTTCCCTATCTTGTTTCAAGCTCTATGGCAAATCAGACTCCTCTTCTGCAGCAACGCGACATAAATATGGATACTTATAGGCTTGATGAAAATATGAGGTTGCTTACATCGAGACAGATACTGGAGCTATCTAAGCAACAACATGCGCTGTATTTTCATGACATGAATCAAAAGCAAAAGAGATCCAACAATATTTCAAAAGCTCAGCACCATATATATGAGGCTTCAACCTCTGTACAAGGTACTTCTGGTGCATCATTAAAATTGCCCAAAAATAAAGGGGTTTATGGTAATCATGAGATTACTGATGGTTTAGACAAGCGGGCTTCCCTCACAGGTTTGAACAGATACTATCAACTCCCTTCCTTGGCACCAATACCATTACATTTTAAAGTAAAGGAGTCACAATGTAAATGTTCCCATGATCTTCGAAATGATGAGCCATCTTTGAGCCTTGGAATAGACAAAGACAGATCAAGTGCATGTGAAAAATGCTCTGAGCAACCATCAGATATACATTTGGTAGGCAAACATACTCGAGCTGCTCCGGTAAACTGTTCTGGAAGAACATTTTACTCAGGAATTGGGCCCTCCCATTATATCTTAAAACAACAATTTGAAAATGCCTGTGGTGAAACTTACTTTAAGACAGCTTCAAAGTGTAGTAGAGATCAGAATGCTTTGAAGGATGAAAATATTCACTTTGAGCAAGTTGGGAAGTTAGATGGTCAAGGCTCAATCAAATTTGGTTCTCATACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGCTGCTTGTGATGCAACATCTTTAGATCAGACAGCTACTGTTTTGGATTGCGAAGGACAAGACAGTGTTCAACCTGGAAACATTTCTGCCAAACGCTTGAAAAAAACTAATGATGTTGAAGACTTGTTGAAAGAGCAAGAAAACTTTAACGTTTCTTCTGGATGTTCTACTGCTGTGGTTTCTCAGGCATCTGTGGAGGTCAACAGGGTTGATTCTTGTACTGTTGATGCTGTAGATACTGGTTGTGTCAATAACCTTGTAGTTGATGAGGGGTCAGGAATTGAAAAAGGCTGGTCGTCTGATGTGGTTGAAAGTGAAAGAAGTGCTGAGTTTCTAGGTTCAACTGGTAGGAGTTACTTGGAAAAAGGTTTCATGAGAGTCTCAAATGACCAACCATGTCGCAGCCTCCTTGATGAGCTTAAACACTTAGATTCTTTGATATGGAAAAAGGGTCGGGATCAAAGTCATACCACACTTTCTGCTCATTGTAAAGCCAATCAATCTCTCAAAATCAGGAAGGGCTTCAAAGGAGCAAAGCGAAAGAGAAATGAGATGATTCTAGATGCTTCATTGCCTTCTGAAATCCCTTCCTTATTGCATAATGAGAGTGATGAAAGTACTGGAGTTTCTGATACCCCTTCCAGTTTTTCCAAAGAAATACAAATGTACCTTTCATCTAACCAGCAAAGATCATGTAATAAGGCTTCTATTGCTCAACCTAGTACCGAACAAAGACACACTGCATGTTCATCCAAATTTCTTTCTTGTAAGAATCATGTAAGCAAGCACCACAATGACAAAGATTTCTATGAGTCAGATTCAAATACTGATGCTGGGTTTCACACATTGCCTGAAGTTTCTGAAACAAAGAAATTAAGAAAGGATTTAACTTCTGAGTGTTCTGGGCATTTTCAAATGCAAGAACTATCCTATCTGGAACTTGAAAATGCTAAGCTGAAGTCATTCTCTAGCAGGAAGGCAAATGCTCATAGAATCACAAGGCCAGTAGTATGTGGAAAATATGGTGAAATATCTAGTGGACAGTTGACCAGGGAAATACCAAAACCAGCAAAAATTGTCTCTCTCAGCAAAGTTCTTAAAACCTCGAAAAGTGGTATGGTCCTTACAAATGGCAAACCTAGACTAACTTCAAAAAAGAAATGGAAGAGATTGAGCTTTGGAACAAGTGGAAGGCATTGCCGTCAGAAACCTGGTATAGAAACCAAGGAAGATAATGAATCCCAAAATACAACAGTTTGTAATGAAACAAATGTTGATCTGTCAATGGAAGGTGTTGGGAGGGGAAGCAAGCCACATGTTATTTATGAAGGAAAGAGAGATATCAAAATTAGGCAGGGTGATTGTATTGTAAATAGAGCTGATGCTCCATTGAAGCCGAAGAGCAAGGAAATTCGGAAACAGCGTAGCATTAATGAACTCACTGCTATAGAAAACAAAGTGAAGGATATTTTGAAGTATGCTGAAGATAGGGAGCATGGTTTGTATGACACAAAAAGTAGAAACTCTGTTCAACAACACACGAGCATATCTATCATAAATTCAGATCCTTTCTGCTGTGTATGTCGAAGCTCAAGCAATGATAAAATTAACTGTTTGTTGGAATGTAGTAGATGTCTAATTAGAGTGCATCAGGCTTGCTATGGTATTTCCACATTACCAAAAAAAGGCCTTTGGTGTTGCAGGCTATGCCGTACAAACTCTAAAGATATTGCCTGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACGCGAGCATTACAGAGTCGCACAATTGTAAAAAGCCTCCTAAAAGTGTGGAATATTGAAAGCAATGTCATGCCAAAGCATACAACTTCACATGAAGTTGTTGAAACAGAAGCAGATGCATTTCATTCCTCAAAATCTGGTCTAGATGTTGACCAAGATTGTGTTTTAAGGCCTGAAAATGTTGATACATCAACAACAGATCTGTTGAAAGTTGAGTTGTCTACAAATCACGCTCAACACTCCCGATGCTCTGTTACTGATTTTAAGGTACATAACAGCATTACAGCAGGAGTTCTTGATACAACTATAAAGCAGTGGGTTCATATGGTTTGTGGGCTATGGACTCCTGGCACAAGATGCCCCAATGTTGATACCATGAGTGCTTTTGACGTATCTGAGGTTTCGCGTCCAAGAGCAGATGTGGTCTGTTCCATTTGCAATCGATGGGGTGGTTCTTGTATAGAGTGCAGGATTGTTGATTGCTCTATCAAGTTTCATCCTTGGTGTGCTCATCAGAAGAACCTGTTGCAAAGTGAGACTGAAGGTGTTAATGATGAGAAGATTGGATTTTATGGAAGATGTGCACTTCATGCGAATGGCCCTACATGTCAGTCTTCATATGATTCTATTGATGAAATGGGCAGTCAAGAAGAAAAAAAATTCACCTGTGCCAGGACAGAGGGTTACAAGGGCCGTAGATGGGATGGCTTTCAGAATAACCACTACAGGGCCTTAAAAGCCAAGAGGGGATGCCTTGTTCCTGAAGAGCAGTTAAATGCTTGGATTCACATTAATGGGCAGAAATTGTGTTCACAGGGACTCACAAAATTTCCAGATTCAGATATTGAGCATGATTGTCGGAAGGAATATGCTCGGTACAAGCAAGCAAAGGGCTGGAAACGGCTTGTTGTATACAAATCTGGGATACATGCCCTCGGTCTTTACACTTCTCGGTTCATTTCCCGAGGTGAAATGGTTGTCGAGTATGTTGGTGAAATTGTTGGGCTACGTGTGGCTGATAAAAGAGAAAATGAATATCATTCAGGAAGGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTTAGGATAGACAAAGAACATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGATTTGTTAACCACTCATGCCTGCCAAATTGTGTGGCAAAAGTGATTACTATAAGGCATGAGAAGAAGGTTGTCTTCTTTGCAGGGCGGGACATATTTCCTGGTGAAGAGATTACGTACGATTACCACTTCAACCACGAAGACGAAGGAAAGAAGATTCCATGTTACTGTAATTCCAAAAATTGCAGGCGCTATTTGAACTGA 5169 0.3987 MKSNASGSDMSKSDLPHILSSSAVTLRSGKSSDYVMFPKNAHTDHNLFIGALSSKQITTIQDNCNIPLKGFTGISQSLCERVKNQLLESNLAAYTTAPNIGGTQLDDGCQPITPFLDSLKRNGNVLIAHSPTQTPTSLLKEHECIKKKNAKDCLVGRDAASSNIELRLGQPPQTGNPVQSYIEPPLFNALASPPKLQPLKQMINNADLRREEELQSNFSCTDRSFEMVEEQPQLKPRNYMSGVGNASGAARTENVAKRLLFSPFLQFNPQHKGKTKTSQNVVNDGGPMHKKLHSEYSTMQFGRTNVLYNSNGHTGRQLNNSAPGSNKFLDNDKGVNFAKNSCALMNSEFRISELMEFGSITRAVDVSDSCISAVNGKINDSSLPSDTSVGANFLQGSKNVSSFGQDNNVTSGTAIPFEGILKGLPYLVSSSMANQTPLLQQRDINMDTYRLDENMRLLTSRQILELSKQQHALYFHDMNQKQKRSNNISKAQHHIYEASTSVQGTSGASLKLPKNKGVYGNHEITDGLDKRASLTGLNRYYQLPSLAPIPLHFKVKESQCKCSHDLRNDEPSLSLGIDKDRSSACEKCSEQPSDIHLVGKHTRAAPVNCSGRTFYSGIGPSHYILKQQFENACGETYFKTASKCSRDQNALKDENIHFEQVGKLDGQGSIKFGSHTPQWRDVPSKVRKAACDATSLDQTATVLDCEGQDSVQPGNISAKRLKKTNDVEDLLKEQENFNVSSGCSTAVVSQASVEVNRVDSCTVDAVDTGCVNNLVVDEGSGIEKGWSSDVVESERSAEFLGSTGRSYLEKGFMRVSNDQPCRSLLDELKHLDSLIWKKGRDQSHTTLSAHCKANQSLKIRKGFKGAKRKRNEMILDASLPSEIPSLLHNESDESTGVSDTPSSFSKEIQMYLSSNQQRSCNKASIAQPSTEQRHTACSSKFLSCKNHVSKHHNDKDFYESDSNTDAGFHTLPEVSETKKLRKDLTSECSGHFQMQELSYLELENAKLKSFSSRKANAHRITRPVVCGKYGEISSGQLTREIPKPAKIVSLSKVLKTSKSGMVLTNGKPRLTSKKKWKRLSFGTSGRHCRQKPGIETKEDNESQNTTVCNETNVDLSMEGVGRGSKPHVIYEGKRDIKIRQGDCIVNRADAPLKPKSKEIRKQRSINELTAIENKVKDILKYAEDREHGLYDTKSRNSVQQHTSISIINSDPFCCVCRSSSNDKINCLLECSRCLIRVHQACYGISTLPKKGLWCCRLCRTNSKDIACVLCGYGGGAMTRALQSRTIVKSLLKVWNIESNVMPKHTTSHEVVETEADAFHSSKSGLDVDQDCVLRPENVDTSTTDLLKVELSTNHAQHSRCSVTDFKVHNSITAGVLDTTIKQWVHMVCGLWTPGTRCPNVDTMSAFDVSEVSRPRADVVCSICNRWGGSCIECRIVDCSIKFHPWCAHQKNLLQSETEGVNDEKIGFYGRCALHANGPTCQSSYDSIDEMGSQEEKKFTCARTEGYKGRRWDGFQNNHYRALKAKRGCLVPEEQLNAWIHINGQKLCSQGLTKFPDSDIEHDCRKEYARYKQAKGWKRLVVYKSGIHALGLYTSRFISRGEMVVEYVGEIVGLRVADKRENEYHSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITIRHEKKVVFFAGRDIFPGEEITYDYHFNHEDEGKKIPCYCNSKNCRRYLN. 1723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03176 1722 SMART set_7 1577 1704 IPR001214 GO:0005515
Seca8g03176 1722 ProSiteProfiles SET domain profile. 1577 1698 IPR001214 GO:0005515
Seca8g03176 1722 SMART PHD_3 1212 1259 IPR001965 -
Seca8g03176 1722 SMART PHD_3 1419 1475 IPR001965 -
Seca8g03176 1722 FunFam Histone-lysine N-methyltransferase 1487 1722 - -
Seca8g03176 1722 CDD ePHD 1376 1474 - -
Seca8g03176 1722 MobiDBLite consensus disorder prediction 1082 1105 - -
Seca8g03176 1722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1328 1477 IPR013083 -
Seca8g03176 1722 ProSiteProfiles Extended PHD (ePHD) domain profile. 1328 1475 IPR034732 -
Seca8g03176 1722 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 374 1722 - -
Seca8g03176 1722 SUPERFAMILY FYVE/PHD zinc finger 1205 1259 IPR011011 -
Seca8g03176 1722 Gene3D SET domain 1478 1722 IPR046341 -
Seca8g03176 1722 SUPERFAMILY SET domain 1553 1718 IPR046341 -
Seca8g03176 1722 SMART PostSET_3 1706 1722 IPR003616 -
Seca8g03176 1722 Pfam PHD-zinc-finger like domain 1378 1455 - -
Seca8g03176 1722 Pfam PHD-finger 1225 1259 - -
Seca8g03176 1722 ProSiteProfiles Post-SET domain profile. 1706 1722 IPR003616 -
Seca8g03176 1722 Pfam SET domain 1590 1697 IPR001214 GO:0005515
Seca8g03176 1722 CDD SET_SETD1-like 1578 1718 - -
Seca8g03176 1722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1189 1267 IPR013083 -
Seca8g03176 1722 ProSiteProfiles Zinc finger PHD-type profile. 1210 1261 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03176 Seca-Chr8 90374988 90396213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03176 1578 1722 C2H2 Transcription Factor Family AT2G23740 33.333 1.23e-16 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca8g03176 SET 6.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03176 - - gmx:100816713 2347.39