Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03170 ATGGGGAAGCCGGCGGGGAAGAAGAAGGATCATGAAACTCAGAGGGCGAACAGTGGTAACAAGAAGGGTTGGGAGCGTGCGTCGTCGAAGGCTTTAGACGACGACACGGCCATGTTCATCAACATGTCACAGGAGCTGAGAGAAGAAGGTAACAGGCTATTTCAAAAGAAGGACCACGAAGGCGCGATGTTGAAGTACGAGAAGGCCCTAAAGCTCCTTCCCAAGAGCCACATCGACGTGGCACACCTTCACACCAACATGGCCGTTTGTTACATGCAATTGGGCCTCGGTGAGTACCCTCGAGCCATCAACGAGTGCAACCTCGCCTTGCAGGTTTCCCCTCGCTACAGCAAGGCCCTGTTAAAGAGAGCCAAGTGCTATGAAGCGCTGAACCGGTTGGATTTGGCCATGAGAGACGTTCGCGTTGTGTTGAATTCAGAGCCTAATAATCTCACCGCTTTGGAGATTCTGGATAGTTTGAGAAGCACCATGGATGAGAAAGGGATTACTATTGATGAGACAGAGATTGCTCTGGCCACTATACAGCAGCAGGAGCCTCCCGCGGCTCGGTTGCGGAAAGTGGTGAGGGAGAAGCTGAAGAAAAAGAAGGAACATGAAGAGGAAGACCAAGAAACCAAAATCAAAATCAAAACCAAAACCAAGGTGGTTGTTGAGGAGAAGGCAAATGCTAAGAATGTTAAGGAGAAGGACAAGAAGGATAAGGATAAAGATAAGGATAAGGATAAGGATGATAAAGAATTTGTTAAGAAAGATAAAGCAGTCACCAGGACTGTGAAATTGATATATGGGGAAGACATAAGGTGGGCGCAGTTGCCTGTGAATTGTAGCATGAAATTGGTGAGGGATGTGATAAAGGACCGGTTTCCGGGGTTAAAGGGTGTTCTTGTTAAGTATAGGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTGCTGAATTGAGGTTAGCTGAGGTCTGTCATGTTCTTGGCTCAATTCGGCTCTATATTACGCAGGTGGATCCGGATCAGGAACCGTGTTATGATGAAACAACAACCAGTCATGGTGGGGTGCAAATGGAGAATGGGGCTGCTGAAGGAGGCAGAGGTGGGGGTAATAGGATGACTACTGTCGAGGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCTGATGCATATCTGGATATTCATGAGGTTGGGATGAAGCTATATTCAGAAGCAATGGAGGATACGGTGACGAATGATGGTGCTCAAGAGCTGTTTGACATTGCTGCTGATAAATTTCAAGAGATGACTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCATATGTCCAAGGCGAGGAGGCGAGTTTCCTTTCCAGAGGATGGGCCAAGAGAAGCTTCTTTTGAGCATATTAAAGCTGCATATGAGTGGGCTCAAAAGGAGTACAAGGAAGCAGAAATGAAATATGAAGAAGCTGTGAAAATCAAACCTGACTTTTATGAAGGACTTCTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTCTGCTGGTGTTATTTAACTGCTAACAACACGGATTTGGAAATTGGTCCTTCTGAGGAGGTTCTGCAGCTCTATAACAAAGCAGAGGACAGCATGGAGAAAGGCATGTTGATGTGGGAGGAGATTGAGGAGCAGCGATTGAATGGACTATCCAAATTAGATAAATATAATGCACAGTTAGAGAAAATGGGTTTGCACGGTCTTTTCAGGGATGTTTCTTCTGATGAAGCTGAAGAGCAGGCTGCAAAGATGAGGTTACAAATATATCTTTTATGGGGCACCTTATTGTATGAGCGTTCTGTTGTGGAATATAAGCTAGGCCTACCAACATGGGAGGAATGTTTGGAGGTTGCGGTTGAAAAGTTTGAACTAGCTGGAGCTTCTTCATCTGACATTGGTGTCATGATAAAGAATCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCGTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCTTTGTTTCGTCGGCGTGTTCCAAAACTCCATTACATCCTGGAGCAGATTTAA 2130 0.4512 MGKPAGKKKDHETQRANSGNKKGWERASSKALDDDTAMFINMSQELREEGNRLFQKKDHEGAMLKYEKALKLLPKSHIDVAHLHTNMAVCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRAKCYEALNRLDLAMRDVRVVLNSEPNNLTALEILDSLRSTMDEKGITIDETEIALATIQQQEPPAARLRKVVREKLKKKKEHEEEDQETKIKIKTKTKVVVEEKANAKNVKEKDKKDKDKDKDKDKDDKEFVKKDKAVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIKDRFPGLKGVLVKYRDREGDLVTITTTAELRLAEVCHVLGSIRLYITQVDPDQEPCYDETTTSHGGVQMENGAAEGGRGGGNRMTTVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSEAMEDTVTNDGAQELFDIAADKFQEMTALALFNWGNVHMSKARRRVSFPEDGPREASFEHIKAAYEWAQKEYKEAEMKYEEAVKIKPDFYEGLLALGYQQFEQAKLCWCYLTANNTDLEIGPSEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYNAQLEKMGLHGLFRDVSSDEAEEQAAKMRLQIYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASSSDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQI. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03170 709 SUPERFAMILY TPR-like 43 513 IPR011990 GO:0005515
Seca8g03170 709 SMART tpr_5 468 501 IPR019734 GO:0005515
Seca8g03170 709 SMART tpr_5 43 76 IPR019734 GO:0005515
Seca8g03170 709 SMART tpr_5 81 116 IPR019734 GO:0005515
Seca8g03170 709 SMART tpr_5 117 150 IPR019734 GO:0005515
Seca8g03170 709 PANTHER PROTEIN CLMP1 1 707 IPR044517 -
Seca8g03170 709 Pfam PB1 domain 262 337 IPR000270 GO:0005515
Seca8g03170 709 SUPERFAMILY CAD & PB1 domains 262 352 - -
Seca8g03170 709 CDD PB1 264 337 - -
Seca8g03170 709 Gene3D Tetratricopeptide repeat domain 407 572 IPR011990 GO:0005515
Seca8g03170 709 MobiDBLite consensus disorder prediction 230 252 - -
Seca8g03170 709 Gene3D - 252 339 - -
Seca8g03170 709 SMART PB1_new 262 340 IPR000270 GO:0005515
Seca8g03170 709 MobiDBLite consensus disorder prediction 1 19 - -
Seca8g03170 709 Coils Coil 477 497 - -
Seca8g03170 709 MobiDBLite consensus disorder prediction 351 371 - -
Seca8g03170 709 Coils Coil 188 208 - -
Seca8g03170 709 ProSiteProfiles PB1 domain profile. 262 340 IPR000270 GO:0005515
Seca8g03170 709 Gene3D Tetratricopeptide repeat domain 41 168 IPR011990 GO:0005515
Seca8g03170 709 MobiDBLite consensus disorder prediction 1 30 - -
Seca8g03170 709 ProSiteProfiles TPR repeat profile. 43 76 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03170 Seca-Chr8 90288790 90293876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03170 33 150 Calmodulin-binding Proteins AT3G25230 30.709 4.36e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03170 K26538 - mnt:112092242 904.049