Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g03149 | ATGGGAGAAACAAAGGACGAAGGATACGAGGAAGAGCTTCTTGACTACGAAGAGGAAGAAGACAAGGCCCCTGATTCCGTAGGAGCTAAAGTCAACGGCGAAGCTGCGAAGAAGGGCTATGTTGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCTTCTGAAGGCATATTATCTGCATCCTTATTTCCTTCGACCTCCATTTTCTTTGGTTCATCACCAGTGCAACATGAATGCATACCTCAAGCAATCCTCGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGCAAAACTGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTGCAGGCCAAGTTTCTGCTCTTGTTCTGTGTCATACTAGGGAATTGGCATACCAGATATGCCACGAGTTTGAAAGGTTCAGCACCTACTTGCCTGATCTCAAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGTACACCTGGAAGAATTCTAGCATTGGCCAGGGATAAGGAACTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAAAGATGTGCAAGATATTTTCAAGATGACTCCCCATGATAAGCAAGTCATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAAAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTTCATGGACTTGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTACTTGATGCTCTCGACTTCAATCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCCGCTGAGCTGGACAAACTGCTTGTGGAGTGCAACTTCCCATCTATTTGCATTCATTCTGGAATGTCTCAGGAAGAAAGGTTAAAGCGATACAAAGGTTTTAAGGAGGGGCATACAAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATCGACATTGAACGAGTGAATATAGTCATAAACTATGACATGCCTGATTCTGCTGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGCGCTACTGATGTTGATGTTCTCAACAATGTTCAGTCCAGGTTTGAGGTAGACATAAAACAGCTTCCTGAGCAGATTGATACATCTACCTACATGCCATCATAG | 1341 | 0.4258 | MGETKDEGYEEELLDYEEEEDKAPDSVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGILSASLFPSTSIFFGSSPVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCATDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS. | 447 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g03149 | 446 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 34 | 271 | - | - | |
Seca8g03149 | 446 | CDD | SF2_C_DEAD | 282 | 411 | - | - | |
Seca8g03149 | 446 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Seca8g03149 | 446 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Seca8g03149 | 446 | Gene3D | - | 42 | 277 | IPR027417 | - | |
Seca8g03149 | 446 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 134 | 416 | IPR027417 | - | |
Seca8g03149 | 446 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 281 | 442 | IPR001650 | - | |
Seca8g03149 | 446 | SMART | ultradead3 | 84 | 285 | IPR014001 | - | |
Seca8g03149 | 446 | Pfam | Helicase conserved C-terminal domain | 295 | 402 | IPR001650 | - | |
Seca8g03149 | 446 | SMART | helicmild6 | 321 | 402 | IPR001650 | - | |
Seca8g03149 | 446 | Pfam | DEAD/DEAH box helicase | 90 | 255 | IPR011545 | GO:0003676|GO:0005524 | |
Seca8g03149 | 446 | FunFam | DEAD-box ATP-dependent RNA helicase | 278 | 446 | - | - | |
Seca8g03149 | 446 | CDD | DEADc_DDX39 | 45 | 271 | - | - | |
Seca8g03149 | 446 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 96 | 269 | IPR014001 | - | |
Seca8g03149 | 446 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 45 | 420 | - | - | |
Seca8g03149 | 446 | Gene3D | - | 278 | 445 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g03149 | Seca-Chr8 | 89304280 | 89313144 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g03149 | 1 | 446 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 79.918 | 0.0 | 745 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g03149 | K12812 | - | gmx:100808957 | 811.986 |