Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03149 ATGGGAGAAACAAAGGACGAAGGATACGAGGAAGAGCTTCTTGACTACGAAGAGGAAGAAGACAAGGCCCCTGATTCCGTAGGAGCTAAAGTCAACGGCGAAGCTGCGAAGAAGGGCTATGTTGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCTTCTGAAGGCATATTATCTGCATCCTTATTTCCTTCGACCTCCATTTTCTTTGGTTCATCACCAGTGCAACATGAATGCATACCTCAAGCAATCCTCGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGCAAAACTGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTGCAGGCCAAGTTTCTGCTCTTGTTCTGTGTCATACTAGGGAATTGGCATACCAGATATGCCACGAGTTTGAAAGGTTCAGCACCTACTTGCCTGATCTCAAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGTACACCTGGAAGAATTCTAGCATTGGCCAGGGATAAGGAACTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAAAGATGTGCAAGATATTTTCAAGATGACTCCCCATGATAAGCAAGTCATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAAAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTTCATGGACTTGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTACTTGATGCTCTCGACTTCAATCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCCGCTGAGCTGGACAAACTGCTTGTGGAGTGCAACTTCCCATCTATTTGCATTCATTCTGGAATGTCTCAGGAAGAAAGGTTAAAGCGATACAAAGGTTTTAAGGAGGGGCATACAAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATCGACATTGAACGAGTGAATATAGTCATAAACTATGACATGCCTGATTCTGCTGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGCGCTACTGATGTTGATGTTCTCAACAATGTTCAGTCCAGGTTTGAGGTAGACATAAAACAGCTTCCTGAGCAGATTGATACATCTACCTACATGCCATCATAG 1341 0.4258 MGETKDEGYEEELLDYEEEEDKAPDSVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGILSASLFPSTSIFFGSSPVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCATDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03149 446 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 271 - -
Seca8g03149 446 CDD SF2_C_DEAD 282 411 - -
Seca8g03149 446 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g03149 446 MobiDBLite consensus disorder prediction 1 27 - -
Seca8g03149 446 Gene3D - 42 277 IPR027417 -
Seca8g03149 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 416 IPR027417 -
Seca8g03149 446 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 281 442 IPR001650 -
Seca8g03149 446 SMART ultradead3 84 285 IPR014001 -
Seca8g03149 446 Pfam Helicase conserved C-terminal domain 295 402 IPR001650 -
Seca8g03149 446 SMART helicmild6 321 402 IPR001650 -
Seca8g03149 446 Pfam DEAD/DEAH box helicase 90 255 IPR011545 GO:0003676|GO:0005524
Seca8g03149 446 FunFam DEAD-box ATP-dependent RNA helicase 278 446 - -
Seca8g03149 446 CDD DEADc_DDX39 45 271 - -
Seca8g03149 446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 269 IPR014001 -
Seca8g03149 446 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 420 - -
Seca8g03149 446 Gene3D - 278 445 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03149 Seca-Chr8 89304280 89313144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03149 1 446 Eukaryotic Initiation Factors Gene Family AT5G11200 79.918 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03149 K12812 - gmx:100808957 811.986