Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03140 ATGGGTGTCAGAAATTCGCCACCCATTACTAGGAAGAGAAGGGTATGGCTTGGTACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAGTGGTCACAATGCCAAGACCAATTTCCCTTTTACACCAAATGTTCAACCTGAAGGTTCCAATGCCACAGCAAATCATTATGACTCTTTCTTCTCTCCCAAGGCTCTTTCTGATCTCCTGAGCAAAAAGCTCATGAGGAAGTGCTGCAAAGACCCTCCTTCTCCATCCCTCACTTGTCTGAGGCTTGATGCTGACAATTCTCACATTGGAGTGTGGCAAAAAGGTGCAGGATCAGATTCAGACTCTAATTGGATCATAAGGGTAGAGCTTGGAAAGAAAAATGCAGAGGGTGAGTCAACTTTGTCAACAGAATCACCACCAAACACTATTGATGATGCTGGAAATGAGGTGGATGAAGAAGAGGACAGAGTGGCCGTACAGATGATTGAAGAGCTACTTAATTGGAACAATCCATGTGATTCAAGTAACTTTCAGGAAGAAAAATGGAACCTTTCTTGTCAGAGTTCTTGA 582 0.4399 MGVRNSPPITRKRRVWLGTFETAEAAARAYDQAAILMSGHNAKTNFPFTPNVQPEGSNATANHYDSFFSPKALSDLLSKKLMRKCCKDPPSPSLTCLRLDADNSHIGVWQKGAGSDSDSNWIIRVELGKKNAEGESTLSTESPPNTIDDAGNEVDEEEDRVAVQMIEELLNWNNPCDSSNFQEEKWNLSCQSS. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03140 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 141 - -
Seca8g03140 193 ProSiteProfiles AP2/ERF domain profile. 1 47 IPR001471 GO:0003700|GO:0006355
Seca8g03140 193 SMART rav1_2 2 53 IPR001471 GO:0003700|GO:0006355
Seca8g03140 193 MobiDBLite consensus disorder prediction 133 156 - -
Seca8g03140 193 SUPERFAMILY DNA-binding domain 8 48 IPR016177 GO:0003677
Seca8g03140 193 MobiDBLite consensus disorder prediction 133 147 - -
Seca8g03140 193 Pfam AP2 domain 10 40 IPR001471 GO:0003700|GO:0006355
Seca8g03140 193 Gene3D AP2/ERF domain 3 48 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03140 Seca-Chr8 89195143 89196571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03140 12 182 AP2-EREBP Transcription Factor Family AT5G25390 54.651 5.02e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g03140 AP2 8.6e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03140 - - lang:109326202 211.846