Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03132 ATGTCTAAGGTGTTTCAATTTCGATCAAAGATCAACCCATCTCAGGCATTGATAATGATTGAACCTACTTTCTGGGAGAAAGTAAAAGGAGATATACCTCAGAATTGTGTGCTTATAGATCCTGCTGAGAATACGTTTCCTGTTTTGGTAGTAGATAACGGTGATAGTGTTGCGTTTGTTAAGGGCGTTGATGAAATTTGTAGAATCTATAGGCTAGAAGAAACTCATAACGTCGTGTGTACTTACTTTGGGGATGATGAGTTCAAAATACAAATATTGAATGGGGACAATATGGTAGTAAAGTGTCCGGATATTATAAACAATGGTGTGCATTTAGAGTTCTCTGATACTGATTCTATTCAAGATCTTGGACCTTTCCTTTTGTGGAGGGTTAATCTGTCTAAGGCTGCTGCTTCGGGTATAAATGTAATGCCTATACCTGCTAGGTTAGTGACAAGTCTTCTGGATGGAAACCAATCATATGTTGATATCATAGATGAGGACTCTAATCTCACATCCTGCAAATTGTTGAGACCTAAAAGGAGGAAAACTGAGCGGTACATAGCTGGCAGTTGGTGCCAGTTTATTCGGGGAAAGAACTTGAAAGAGGGGGATGTGCTTGGCTTTTACTCCGCTAATAACATGAAAAGTATTAGTTCAAAGGGAGATAGTGCTATCTTTGAAAGAAATGTGAACACAATGATTAGCTTTTATGGGCTCAATAGAAAGCATAGTGGTCTTTTTTGCTACATGGGTGGGAACCAATTCTACATAAGGCTAGGAAATCGTTACGGGGTTGAGATTAATTATCCCCAAAAGCCAATTGAGGTGGTGGAGATATCTTCGGATGATAGTGATATTGACAACCAAGGGAAGAATGCTTTGCCTATTCCTGCACATTTTGTCAGAGAGGGGCTTCTAGAAAGTCAGCGAGAATTGACTTTAAGACTTAGCAACGGTGAACAGATTCTTTGCAAAATATCAAAAGGTTCTAGAAGGAAGGATGAACGATATCTCTGTAGTGGTTGGTACAAGTTTTGTCGCAACAACAACTTCAAAGAGGGAGATATGTTGTTGTTTTATTCAAAGGGTGATGCTTACAATCTGTGTGTTAGGATAAAGCGCTCCTAA 1131 0.3917 MSKVFQFRSKINPSQALIMIEPTFWEKVKGDIPQNCVLIDPAENTFPVLVVDNGDSVAFVKGVDEICRIYRLEETHNVVCTYFGDDEFKIQILNGDNMVVKCPDIINNGVHLEFSDTDSIQDLGPFLLWRVNLSKAAASGINVMPIPARLVTSLLDGNQSYVDIIDEDSNLTSCKLLRPKRRKTERYIAGSWCQFIRGKNLKEGDVLGFYSANNMKSISSKGDSAIFERNVNTMISFYGLNRKHSGLFCYMGGNQFYIRLGNRYGVEINYPQKPIEVVEISSDDSDIDNQGKNALPIPAHFVREGLLESQRELTLRLSNGEQILCKISKGSRRKDERYLCSGWYKFCRNNNFKEGDMLLFYSKGDAYNLCVRIKRS. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03132 376 Gene3D - 3 96 IPR015300 -
Seca8g03132 376 Gene3D - 282 376 IPR015300 -
Seca8g03132 376 ProSiteProfiles B3 DNA-binding domain profile. 280 376 IPR003340 GO:0003677
Seca8g03132 376 SUPERFAMILY DNA-binding pseudobarrel domain 12 94 IPR015300 -
Seca8g03132 376 CDD B3_DNA 285 375 IPR003340 GO:0003677
Seca8g03132 376 Gene3D - 116 237 IPR015300 -
Seca8g03132 376 Pfam B3 DNA binding domain 288 375 IPR003340 GO:0003677
Seca8g03132 376 PANTHER B3 DOMAIN-CONTAINING 292 373 - -
Seca8g03132 376 SMART B3_2 280 375 IPR003340 GO:0003677
Seca8g03132 376 SMART B3_2 7 96 IPR003340 GO:0003677
Seca8g03132 376 SMART B3_2 129 222 IPR003340 GO:0003677
Seca8g03132 376 SUPERFAMILY DNA-binding pseudobarrel domain 291 371 IPR015300 -
Seca8g03132 376 SUPERFAMILY DNA-binding pseudobarrel domain 127 216 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03132 Seca-Chr8 88959103 88961446 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g03132 B3 9.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03132 - K09287 vun:114194236 55.0694