Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03119 ATGATGGATTCGCCCGAACCTTCCAAGATCAAGGGTAGTTCTTCTGTCCATGCCCTCAATGCCATCACCAATACTCCTTCATCGGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTAAGATTTGTCAACAATTTATCTCCAATAAAGCCTGTCAAGGCTTGTCATGTGGCACAAGGTTTCCTTGGACTCAATTCTCCACCTCTTGTGTTCAAGTCACCGCGTATTAGTCACCGTGAAACACAGTTCTTGGAAAGGGCTCAAGGCACTCAGTCATCCAATGGAGAAATATCTCAAAGTGGCAATGGAGGCAACATTCTTGATGAAGCTCCTGGTGATTCCAACAAATCAAATTCTCAACAGCCACTGCAAGAGAGGTTTATAACTGACACTCAGAAGGATATTGACATCAAGAATGAAGCAAATAAAAGCTGCAGTCCTACACCATCTGTTGATGAATATTTGGCTGATCCTGGGGATGTTGATCATATGTATTCAGTCAACCCAGATGTGGAACAATCTACTGATGCAGTTGAATCATCACTAAGTGACTTACCTCAGTCAAAGAAAAGTATACTAAATTTTGATAGGAAAGATGATCCTGGTGATAAAGCAGAAGAACCTTTGCCTTTGTCAGATGAATCTAATAGGGTTCAACAAGAAAGACCAGCATATGTTGAAATGCCTGAGAAAATAGAAGGGGAGATAAAAGATGTTGAATGGACTTCTCAAGATCCCACAAAGTTAGAGTCCAATTTAGCTGCAGATGTTTTTGATAAACAAAATAGTCATGATTCACTTCCCCAGTGTGCAGGAAATGAACGACAGGATCATAATTGTACACCTCAATTATTACCTGATCCTCTGCAGGATATTCAAGAATCCGAAGATTGCAATGAGATGGTGTCAACCTCACATTTAAGTGCTGAGAATATTTCACAAGATGGTTCTGAGGCTAGTGTAAAGTATCATGGCACTCGTAGACGCTGCCTACAATTTGAGGAAGCTGCTTGCAGTGCTTTTGGAAGTAATAAGTCTCATATGAAATTGAATGCAACTTCAAGCCAAATGAAAATGGTCAAGCTGTCCGAACCTATCACTTCCTTGTTTCCTCAACGAGGTAGTGGAAACTTACCTGTGACAGGTTCCAAGCCATCAGGTATTGGGTTGCATTTAAATAGCATCATAAATGCAATGCCACCTGGTCGTGCTTCAACTACGGGTATGAGATTATCAGATGGTTCACAGGGGATGAAATCCACAACTTCAATAAGTTTACATAAAGTGGAGAACATGAAGAGATCCTTAATTTCACCAAATATGGATGGGCAATCATTAGTTGATACTAGAAATGAGAGCCATGGAACTGATGCTTCAGTAGCTGCAGATTCTTTCATTTCTGAACCTCCTAGCTTGACAAAACCTATTACCTTATATCCTGCAAGCGTCCATGATAAAAGGAAACTAAGCCCTAATGCTGGAAATTCTGAGGAATCCAACCAACCTAGCCCTGGCAAAAAAAAGAAGAAGACATCAGTTGCCGCTGATGACAATGATCGTAAGCGCTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGCTGCTGGAATCTTTTGTGGCGAACATTGTTCTTGCCAAGGCTGCTTAAATAAAGAAGAATATGAAGATAAAGTTCTTGAGACAAAGCAACAAATTGAATCCCGAAATCCACTTGCATTTGCTCCCAAGATTGTACAATGTACCACTGATGTTCAGGCAAATAATATGGAAGATACAAATCTGACGACACCATCATCAGCAAGACACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGGCTAATGTTGGATGCTCAAGTGGATGTCGATGTGAGGGATGTAAGAATGTCTTTGGCAGGAAAGAAGGTTAG 1950 0.4015 MMDSPEPSKIKGSSSVHALNAITNTPSSESPQVQESPFLRFVNNLSPIKPVKACHVAQGFLGLNSPPLVFKSPRISHRETQFLERAQGTQSSNGEISQSGNGGNILDEAPGDSNKSNSQQPLQERFITDTQKDIDIKNEANKSCSPTPSVDEYLADPGDVDHMYSVNPDVEQSTDAVESSLSDLPQSKKSILNFDRKDDPGDKAEEPLPLSDESNRVQQERPAYVEMPEKIEGEIKDVEWTSQDPTKLESNLAADVFDKQNSHDSLPQCAGNERQDHNCTPQLLPDPLQDIQESEDCNEMVSTSHLSAENISQDGSEASVKYHGTRRRCLQFEEAACSAFGSNKSHMKLNATSSQMKMVKLSEPITSLFPQRGSGNLPVTGSKPSGIGLHLNSIINAMPPGRASTTGMRLSDGSQGMKSTTSISLHKVENMKRSLISPNMDGQSLVDTRNESHGTDASVAADSFISEPPSLTKPITLYPASVHDKRKLSPNAGNSEESNQPSPGKKKKKTSVAADDNDRKRCNCKKSKCLKLYCDCFAAGIFCGEHCSCQGCLNKEEYEDKVLETKQQIESRNPLAFAPKIVQCTTDVQANNMEDTNLTTPSSARHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNVFGRKEG. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03119 649 SMART CXC_2 517 558 IPR033467 -
Seca8g03119 649 SMART CXC_2 605 646 IPR033467 -
Seca8g03119 649 MobiDBLite consensus disorder prediction 190 210 - -
Seca8g03119 649 MobiDBLite consensus disorder prediction 485 512 - -
Seca8g03119 649 ProSiteProfiles CRC domain profile. 518 645 IPR005172 -
Seca8g03119 649 MobiDBLite consensus disorder prediction 85 223 - -
Seca8g03119 649 MobiDBLite consensus disorder prediction 85 127 - -
Seca8g03119 649 MobiDBLite consensus disorder prediction 167 189 - -
Seca8g03119 649 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 520 556 IPR005172 -
Seca8g03119 649 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 608 642 IPR005172 -
Seca8g03119 649 MobiDBLite consensus disorder prediction 1 34 - -
Seca8g03119 649 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 23 648 IPR044522 GO:0003700
Seca8g03119 649 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03119 Seca-Chr8 88480790 88485171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03119 310 649 CPP Transcription Factor Family AT3G22760 39.412 1.43e-57 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca8g03119 TCR 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03119 K21776 - gmx:547664 773.081