Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03116 ATGACAAAGAAGAAGAATCCCCTGGTGTTTATGGATGTGTCTATAGATGGTGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCCATGATGTTGCTCCAAAGACTACTGAAAATTTTCGTGCATTATGTACAGGAGAAAAGGGAGTCAGTCCAAATAGTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCACATTGTAAAGGGATCCATTGTGAGGTGGTCCCTCTTTTGGTCAGTTACCCTTGTTTGTTATGTAGGATACAGGGCTGATGGTCTCGACTGCTTTTCTTGTGATATAGTTTTAAGGGTGGTGATTTTGTCAATCGAAATGTTGTCCGGGTTGCAAGCCTTGTTCCATTTTCATGTTTCCTGTCTCAATGGGACTGGTGGAGAAAGCATATATGGTTCCAAGTTTCCAGATGAGTCACCTAGGCTTAAGCATGATGCTCCAGGACTTCTATCCATGGCAATTGCTGATCGTGACACTCTTGGTTCTCATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGAAAGCATGTAGTCTTTGGCAAGATTGTGCAAGGGCATAATGTATTGAAGAAAATTGAAGATGTGGGTGATGAAAAAGGACTTCCAACTGTAACTGTTAAAATAATTAATTGTGGTGAATATAATGATGATGGAAAGAAGACATGCAAGTCAAAAATAGGAAGGGATGGATTTTCTGAGGCCAATAATAGTCTTGAAGCACGGCGGAAGGGAAAGCAAAAAAAATCTTCAGGAGACAGAAGGAAAAGGAGAAAATACTACTCATCAGAATCAAATAGTTCTTCAGATTCAGACATGAATTCTTCAGAAAGTGATAGTGATTCTGACTCAGATGTGTCTTCATCATCTTACACAAGTTCCTCCAGTGATGATAGGCGAAGGAAGAGAAAGAGATCCAGGAAAGATAAACATAGACGTGGAAAAAGAAGAGATAAACATCGAGACAAGAGGCGGAGGAAACAAGATAAGAGATCAAAGCGTAAATCAAGAAGGGAATCAAGCAGTAATACTGATTCGGATAGTGAAAGTAAGGGTGACAACAGCTCTGATAACAAAAGTCTTGGTGCTCAAGGGAATCAGAAGAGTAAAGATCATTCTCAAAGAAATGCAGAAGATCAATCTTCCTTAGGTTTGGAGAAAGAATTACCTCCCATGCATCTCAAAAAGAGGGAGAGGATGGGTATGCTAGAGGAGGAAGAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAACGGCATTGGGGCCAAACATAAGTCTGACAGAAGTGCAGAGAGGCAGCCTGACGTGATGGATGATCATCCAGGGAAATCTAGGAGTCGAAGCATGAGTCCCAAGCGATCCATGAGTAAGAGTATGAGTATTAGTCCAAGGAGTGAGATCAAAAGCCCAAGCCTTAGTCCAAAAAGGAGATTAAGCAGAAGTCCAAGTGGTAGTAGAAGCCCTCGTGCTCCAACAGGGAGGAGTTTGAGCAGGAGTCCAGGTAGAAGCATAAGCAGAAGTCCAAACAGAAGCATCAGCAAAAGCCCAGTGAGAGGCAGGAAGGGCAGAAGTGTCAGTAGAAGCCCTATGAGAACTCGTGATCATAGAAGTGTAAGTGAGAGCCCTGTGAGATCTCGTGATCGAAGAAGTTTCAGCAAGAGCCCTGTAAGATCTTTTACTCATAGCCACAGGAGCAAGAGTTCTCCTAGAGTATCATCGCGAAAAACAATCAGTAGAAGTCCTGTTAGAGTTTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAAATCATCACGAATAACAATCAGTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCGGTTAGATCATCACGAAGAACAATTAGTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGCCCAGTTAGATCAACACGAAGAACAGTTACTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCACGAAGAACAATTAGTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCTGCCCGAAGCTTAAGCAGAAGCTCTGGCAGGGTCCCTTTGAGAAACATTAGCCAAAGTCCAGTTAGAATGCCAAGCAGAGGCAATCGCCGCAGTTATTCTAGGAGTCGTAGTCCTGTTCGTAGGGCAAGGACACCTCGTGGGAGGAGTTTGTCAAGGAGTGCGTCACCTGATGCTTCACCAAAACGTATCAGGAGGGGAAGAGGTTTTAGTGAACAATACTCTTATGCTAGAAGGTATAGAACCCCCTCTCGGTCTCCTGTGCGGTCATACCGCTACAATGGAAGAAGTGACCGTGACAGATATTCAGGCTACAGAAGGTACTCCCCTAGGCGATTTAGGAGCCCACTACAACGTGGAAGGACTCCACCAAGGTACCGAAGTAGGAGAAGCAGAACACCATCTGTATCACGCAGTCCACATTACCGAGCTCGACGATATAGCCGAAGCCAGAGCCCAGTTCGCAGTCGTTCACCACCACGTGTGAATAGGCGAATATCATCATCTCAGAGCAGGAGTCGATCACGATCCAGGTCTTCAGTTGAATCACAATCTCCAAGAAAAGTTAGCAGAGACAACAGGTCAAGGTCTTCTTCTGGAAGCCCAGAGGGGAAGAAAGGCCTGGTCTCTTATGGAGATGGTTCTCCCGATTCAAGCTGA 2754 0.4415 MTKKKNPLVFMDVSIDGDPVERMVFELFHDVAPKTTENFRALCTGEKGVSPNSGKSLHYKGSFFHHIVKGSIVRWSLFWSVTLVCYVGYRADGLDCFSCDIVLRVVILSIEMLSGLQALFHFHVSCLNGTGGESIYGSKFPDESPRLKHDAPGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKIVQGHNVLKKIEDVGDEKGLPTVTVKIINCGEYNDDGKKTCKSKIGRDGFSEANNSLEARRKGKQKKSSGDRRKRRKYYSSESNSSSDSDMNSSESDSDSDSDVSSSSYTSSSSDDRRRKRKRSRKDKHRRGKRRDKHRDKRRRKQDKRSKRKSRRESSSNTDSDSESKGDNSSDNKSLGAQGNQKSKDHSQRNAEDQSSLGLEKELPPMHLKKRERMGMLEEEEFPKENGERRSNGIGAKHKSDRSAERQPDVMDDHPGKSRSRSMSPKRSMSKSMSISPRSEIKSPSLSPKRRLSRSPSGSRSPRAPTGRSLSRSPGRSISRSPNRSISKSPVRGRKGRSVSRSPMRTRDHRSVSESPVRSRDRRSFSKSPVRSFTHSHRSKSSPRVSSRKTISRSPVRVSRKSISRSPVKSSRITISRSPVRVSRKSISRSPVRSSRRTISRSPVRVSRKSISRSPVRSTRRTVTRSPVRVSRKSISRSPVRSSRRTISRSPVRVSRKSISRSPVRSSARSLSRSSGRVPLRNISQSPVRMPSRGNRRSYSRSRSPVRRARTPRGRSLSRSASPDASPKRIRRGRGFSEQYSYARRYRTPSRSPVRSYRYNGRSDRDRYSGYRRYSPRRFRSPLQRGRTPPRYRSRRSRTPSVSRSPHYRARRYSRSQSPVRSRSPPRVNRRISSSQSRSRSRSRSSVESQSPRKVSRDNRSRSSSGSPEGKKGLVSYGDGSPDSS. 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03116 917 MobiDBLite consensus disorder prediction 849 882 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 533 560 - -
Seca8g03116 917 SUPERFAMILY Cyclophilin-like 5 220 IPR029000 -
Seca8g03116 917 MobiDBLite consensus disorder prediction 361 376 - -
Seca8g03116 917 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 220 - -
Seca8g03116 917 Gene3D - 1 221 IPR029000 -
Seca8g03116 917 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 220 IPR002130 GO:0000413|GO:0003755
Seca8g03116 917 MobiDBLite consensus disorder prediction 229 917 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 341 360 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 454 520 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 306 340 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 395 452 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 270 300 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 790 805 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 577 731 - -
Seca8g03116 917 MobiDBLite consensus disorder prediction 732 746 - -
Seca8g03116 917 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 219 IPR002130 GO:0000413|GO:0003755
Seca8g03116 917 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Seca8g03116 917 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Seca8g03116 917 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 168 180 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03116 Seca-Chr8 88422086 88428852 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03116 129 216 U-box Gene Family AT5G67530 43.333 1.30e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03116 K09566 - gmx:100785820 359.377