Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03110 ATGACAAAGAAGAAGAATCCCCTGGTGTTTATGGATGTGTCTATAGATGGTGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCCATGATGTTGCTCCAAAGACTGCTGAAAATTTTCGTGCATTATGTACAGGAGAAAAGGGAGTCAGTCCAAATAGTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCACATTGTAAAGGGATCCATTGTGCGGTGGTCCCTCTTTTGGTCAGTTACCCTTGTTTATTATGTAGGATACAGGGCTGATGGTCACAACTGCTTTTCTTGTGATATAGTTTTAAGGGTGGTGATTTTGTCAATCGAAATGTTGTCCGGGTTGCAAGCCTTGTTCCATTTTCATGTTTCCTGTCTCAATGGGACTGGTGGAGAAAGCATATATGGTTCCAAGTTTCCAGATGAGTCACCTAGGCTTAAGCATGATGCTCCAGGACTTCTATCCATGGCAATTGCTGATCGTGACACTCTTGGTTCTCATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGAAAGCATGTAGTCTTTGGCAAGATTGTGCAAGGGCATAATATATTGAAGAAAATTGAAGATGTGGGTGATGAAAAAGGACTTCCAACTGTAACTGTTAAAATAATTAATTGTGGTGAATATAATGATGATGGAAAGAAGACATGCAAGTCAAAAATAGGAAGGGATGGATTTTCTGAGGCCAATAGTCTTGAAGCACGGCGGAAGGGAAAGCAAAAAAAATCTTCAGGAGACAGAAGGAAAAGGAGAAAATACTACTCATCAGAATCAAATAGTTCTTCAGATTCAGACATGAATTCTTCAGAAAGTGATAGTGATTCTGACTCAGATGTGTCTTCATCATCTTACACAAGTTCCTCCAGTGATGACAGGCGAAGGAAGAGAAAGAGATCCAGGAAAGATAAACATAGACGTGGAAAAAGAAGAGATAAACATCGAGACAAGAGGCGGAGGAAACAAGATAAGAGATCAAAGCGTAAATCAAGAAGGGAATCAAGCAGTAATACTGATCCGGATAGTGAAAGTAAGGGTGACAATAGCTCTGATAACAAAAGTCTTGGTGCTCAAGGGAATCAGAAGAGTAAAGATCATTCTCAAAGAAATGCAGAAGATCAATCTTCCTTAGGTTTGGAGAAAGAATTACCTCCCATGCATCTTATAAAGAGGGAGAGGATGGGTATGCTAGAGGAGGAAGAATTCCCAAAGGAAAATGGAGAGCGGCGCAGCAACGGCATTGGGGCCAAACATAAGTCTGACAGAAGTGAAGAGAGGCAGCCTGACGTGATGGATGATCATCCAGGGAAATCTAGGAGTCGGAGCATGAGTCCCAAGCGATCCATGAGTAAGAGTATGAGTATTAGTCCAAGGAGTGAGATCAAAAGCCCAAGCCTTAGTCCAAAAAGGAGATTAAGCAGAAGTCCAAGTGGTAGTAGAAGCCCTCGTGCTCCAACACGGAGGAGTTTGAGCAGGAGTCCAGGTAGAAGCATAAGCAGAAGTCCAAACAGAAGCATCAGCAGAAGCCCAGTGAGAGGCAGGAAGGGGAGAAGTGTCAGTAGAAGCCCTATGAGAACTCGTGATCATAGAAGTGTAAGTGAGAGCCCTGTGAGATCTCGTGATCGAAGAAGTTTCAGCAAGAGCCCTGTAAGATCTTTTTCTCATAGCCACAGGAGCAAGAGTTCTCCTAGAGTTTCATCGCGAAAAACAATCAGTAGAAGTCCTGTTAGAGTTTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAAATCATCACCAATAACAATCAGTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCGATTAGATCATCACGAAGAACAATTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCAACACGAAGAACAGATACTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCACGAAGAACAATTAGTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCACGAAGAACAATTAGTAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCTGCCCGAAGCTTAAGCAGAAGCTCTGGCAGGGTCCCTTTGAGAAACATTACCCAAAGTCCAGTTAGAATGCCAAGCAGAGGCAATCGCCGCAGTTATTCTAGGAGTCGTAGCCCTGTTCGTAGGGCAAGGACTCCTCGTGGAAGGAGTTTGTCAAGAAGTGTGTCACCTGATGCTTCACCAAAACGTATCAGGAGGGGAAGAGGTTTTAGTGAACGATACTCTTATGCTAGAAGGTATAGAACCCCCTCTCGGTCTCCTGTGAGGTCATACCGCTTCAATGGAAGAAGTGACCGGGACAGATATTCAGGTTACAGAAGGTACTCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGGACTCCGCCAAGGTATCGAAGCAGGAAAAGCAGAACACCATCTGTATCACGCAGCCCACGTTACCGAGCTCGACGATATAGCAGAAGCCAGAGCCCAGTTCGCAGTCGTTCACCACCTCATGTGGATAGGCAAATGTCATCTCAGAGCAGGAGTCGATCACGATCCAGGTCTTCAGTGGAATCACAATCTCCAAGAAAAGCAAGCATAGCCAACAGGTCAAGGTCTTCATCTGGAAGCCCAGACGTGAAGAAAGGCCTGGTCTCTTATGGAGATGGTTCTCCCGATTCAAGCAGAGGGTGA 2823 0.4431 MTKKKNPLVFMDVSIDGDPVERMVFELFHDVAPKTAENFRALCTGEKGVSPNSGKSLHYKGSFFHHIVKGSIVRWSLFWSVTLVYYVGYRADGHNCFSCDIVLRVVILSIEMLSGLQALFHFHVSCLNGTGGESIYGSKFPDESPRLKHDAPGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKIVQGHNILKKIEDVGDEKGLPTVTVKIINCGEYNDDGKKTCKSKIGRDGFSEANSLEARRKGKQKKSSGDRRKRRKYYSSESNSSSDSDMNSSESDSDSDSDVSSSSYTSSSSDDRRRKRKRSRKDKHRRGKRRDKHRDKRRRKQDKRSKRKSRRESSSNTDPDSESKGDNSSDNKSLGAQGNQKSKDHSQRNAEDQSSLGLEKELPPMHLIKRERMGMLEEEEFPKENGERRSNGIGAKHKSDRSEERQPDVMDDHPGKSRSRSMSPKRSMSKSMSISPRSEIKSPSLSPKRRLSRSPSGSRSPRAPTRRSLSRSPGRSISRSPNRSISRSPVRGRKGRSVSRSPMRTRDHRSVSESPVRSRDRRSFSKSPVRSFSHSHRSKSSPRVSSRKTISRSPVRVSRKSISRSPVKSSPITISRSPVRVSRKSISRSPIRSSRRTIRSPVRVSRKSISRSPVRSTRRTDTRSPVRVSRKSISRSPVRSSRRTISRSPVRVSRKSISRSPVRSSRRTISRSPVRVSRKSISRSPVRSSARSLSRSSGRVPLRNITQSPVRMPSRGNRRSYSRSRSPVRRARTPRGRSLSRSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRFNGRSDRDRYSGYRRYSPRRFRSPPPRGRTPPRYRSRKSRTPSVSRSPRYRARRYSRSQSPVRSRSPPHVDRQMSSQSRSRSRSRSSVESQSPRKASIANRSRSSSGSPDVKKGLVSYGDGSPDSSRG. 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03110 940 Gene3D - 1 221 IPR029000 -
Seca8g03110 940 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 168 180 IPR002130 GO:0000413|GO:0003755
Seca8g03110 940 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Seca8g03110 940 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Seca8g03110 940 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 219 IPR002130 GO:0000413|GO:0003755
Seca8g03110 940 MobiDBLite consensus disorder prediction 779 799 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 340 359 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 754 768 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 532 559 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 871 923 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 812 827 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 453 519 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 305 339 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 240 940 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 661 753 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 576 643 - -
Seca8g03110 940 SUPERFAMILY Cyclophilin-like 6 220 IPR029000 -
Seca8g03110 940 MobiDBLite consensus disorder prediction 646 660 - -
Seca8g03110 940 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 220 IPR002130 GO:0000413|GO:0003755
Seca8g03110 940 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 220 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 395 451 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 360 375 - -
Seca8g03110 940 MobiDBLite consensus disorder prediction 269 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03110 Seca-Chr8 88310813 88317497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03110 129 216 U-box Gene Family AT5G67530 43.333 1.60e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03110 K09566 - gmx:100785820 336.65