Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03106 ATGTTTGCAAGATTAGAAAAGGATAGGAGTTATAACTACTTTTGGGTGCGCTGTTCAAAACTTACATGTGTGACTCTGTTCTCATTACATGCAGCTGCCTGCTTTTTTTATTTTCTTGCCACAAGACATGATCCAAAATCTACATGGCTTGGACTTGTCCCTGATGCCGCTAATCAAAGTCTATTGGGCCGCTATGTAACATCAGTATATTGGTCCATAGTGACTCTTTCATCTGTTGGTTATGGTGATCTGCATCCTGTAAATACAACTGAAATGATATTTGACATTTTCTATATGCTATTTAATCTTTGGCTCACAGCATATCTTATAGGAAACATGACCAACTTGGTTGTCCATTGGACAGATAGAACTAAAAGATATAGAGATACGGTCCAAGCTGCCTCAAATTTTGCTCATAGGAATCAATTACCTATCCGTTTGCAAGAACAAATATTTGATCATTTGCTTATGAAGTACAGAACTGATATAGAAGGACTGCAGCAACAAGAGATCATTGACTCCCTTCCAAAAGCCATTCAATCTAGCATCTCACACTATCTATTCTATTCTCTTGTTGACAAAGTATATTTGTTTCATGGAGTGTCAAATGACCTACTTTTTCAATTGGTCATGGAGATGAAGGCCGAGTATTTTCCTCCAAAGGAAGACGTGATTTTACAGAATGAAGCACCAACAGACTTTTATATATTGGTTACCGGAGCTGTTGATCTTATCATCCAAATGAATGGAATGGAACAGGTTGTTGGTGAGGCAAAGACAGGAGATGTTGTTGGGGAAATAGGAGTGTTATGTTACAGGCCACAACCATTTACAGTTCGGACTAAGCGATTGTGCCAACTTCTACGTTTGAATCGAACAACATTTCTAAATCTTGCTCATTCAAATGTTGGAGATGGAACAATAATCACCAACAATTTTCTTCAGCATTTAAATGAATCAAAGGATCCAATGATGGAAGGAATCCTGGCTGAAACAGAGGCAATGGTTGCTCGAGGAAAAATGGATTTGCCTGTCAGTTTATTATTTGCAGCTAGTAGAGGAGATGATATATTATTGCATCAATTGTTGAAGAAGGGTTCAGATCCAAATGAAACGGATAAGAATAATGGAAAGACAGCGCTGCATATTGCAGCTTCTATTGGCAATGAACATTGTGTAGTTCTACTTCTGGAATACGGGGCTAATCCCAACATCCAAGATTTAAATGGAAGTGTCCCACTATGGGAAGCAATGGTGGGTAGGTATGAATCGATCATGAAACTTCTCAAAGACAATGGTACAGATATATCATCTGCTGATGTAGGCCATTTTGCATGCATTGCTGTTGAGAAAAATGACATAAAATTGTTGAAGGACATTGTTCAATATGGTGGGGATGTGACACAATCTACAAGGAACGGAACCACTGCACTTCATGCTGCAGTATGTGAAGGAAACGTTGAAATAGTTAAGTTCCTTCTAGATCAAGGAGCTAACATTGATAAACAAGATGATAATGGATGGACTCCAAGGGCATTTGCAGATCATCAATGCCATGAAGAAATACAAAATATATTCCAAGGACTTGGACGAAACAAAAAATCATCTGTTATTCCTCCGATACCAAAGAATGAAGCGTCCTTTGTTGGAAAATGTCAAAGTGAACCCTTTATGCCAGGCATTCCCCAAGGAAGCATGCCACCTAATCAAAAGTTGACATGGTTTGATAATCATCAAAGAAGAAGGGCTAGCCCTTTTCATAATTCCTTTTTTGGGATGATGTCAGCTGCTAATCATGATTACCTTCCATCTCAAAGTGATTGCTCTACTATGACAAGTGTGAATGAATTATCAGCTAGAGTAACACTTAGTTGTCCAGAAAAAGGTGAACATGCAAAAAAGCTTGTTTTTCTACCAAAGTCCCTTCAAGAACTGTTACACCTTGGTGCCAAAAAGTTTGACTTCTCTCCCACCAAAATTTTGACCAAAGAAGGAGCTGAAGTTGATGACATAAATGTAATAAGAGACGGTGATTATCTTATTCTTGCACGGGACTAA 2058 0.3834 MFARLEKDRSYNYFWVRCSKLTCVTLFSLHAAACFFYFLATRHDPKSTWLGLVPDAANQSLLGRYVTSVYWSIVTLSSVGYGDLHPVNTTEMIFDIFYMLFNLWLTAYLIGNMTNLVVHWTDRTKRYRDTVQAASNFAHRNQLPIRLQEQIFDHLLMKYRTDIEGLQQQEIIDSLPKAIQSSISHYLFYSLVDKVYLFHGVSNDLLFQLVMEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLIIQMNGMEQVVGEAKTGDVVGEIGVLCYRPQPFTVRTKRLCQLLRLNRTTFLNLAHSNVGDGTIITNNFLQHLNESKDPMMEGILAETEAMVARGKMDLPVSLLFAASRGDDILLHQLLKKGSDPNETDKNNGKTALHIAASIGNEHCVVLLLEYGANPNIQDLNGSVPLWEAMVGRYESIMKLLKDNGTDISSADVGHFACIAVEKNDIKLLKDIVQYGGDVTQSTRNGTTALHAAVCEGNVEIVKFLLDQGANIDKQDDNGWTPRAFADHQCHEEIQNIFQGLGRNKKSSVIPPIPKNEASFVGKCQSEPFMPGIPQGSMPPNQKLTWFDNHQRRRASPFHNSFFGMMSAANHDYLPSQSDCSTMTSVNELSARVTLSCPEKGEHAKKLVFLPKSLQELLHLGAKKFDFSPTKILTKEGAEVDDINVIRDGDYLILARD. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03106 685 Pfam Cyclic nucleotide-binding domain 217 301 IPR000595 -
Seca8g03106 685 Gene3D - 344 528 IPR036770 -
Seca8g03106 685 ProSiteProfiles KHA domain profile. 620 685 IPR021789 -
Seca8g03106 685 CDD CAP_ED 197 302 IPR000595 -
Seca8g03106 685 ProSiteProfiles Ankyrin repeat profile. 376 408 IPR002110 GO:0005515
Seca8g03106 685 SMART ANK_2a 409 438 IPR002110 GO:0005515
Seca8g03106 685 SMART ANK_2a 473 502 IPR002110 GO:0005515
Seca8g03106 685 SMART ANK_2a 440 469 IPR002110 GO:0005515
Seca8g03106 685 SMART ANK_2a 342 371 IPR002110 GO:0005515
Seca8g03106 685 SMART ANK_2a 376 405 IPR002110 GO:0005515
Seca8g03106 685 SMART ANK_2a 641 670 IPR002110 GO:0005515
Seca8g03106 685 SMART cnmp_10 197 314 IPR000595 -
Seca8g03106 685 SUPERFAMILY Ankyrin repeat 346 530 IPR036770 -
Seca8g03106 685 ProSiteProfiles cAMP/cGMP binding motif profile. 197 316 IPR000595 -
Seca8g03106 685 Pfam Ankyrin repeats (3 copies) 447 519 IPR002110 GO:0005515
Seca8g03106 685 Pfam Ankyrin repeats (3 copies) 347 439 IPR002110 GO:0005515
Seca8g03106 685 Gene3D Jelly Rolls 165 332 IPR014710 -
Seca8g03106 685 Pfam KHA, dimerisation domain of potassium ion channel 620 682 IPR021789 -
Seca8g03106 685 ProSiteProfiles Ankyrin repeat region circular profile. 376 407 - -
Seca8g03106 685 SUPERFAMILY cAMP-binding domain-like 122 317 IPR018490 -
Seca8g03106 685 ProSiteProfiles Ankyrin repeat region circular profile. 473 505 - -
Seca8g03106 685 Pfam Ion transport protein 2 124 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca8g03106 685 FunFam Potassium channel KAT2 185 321 - -
Seca8g03106 685 SUPERFAMILY Voltage-gated potassium channels 2 156 - -
Seca8g03106 685 PRINTS Ankyrin repeat signature 489 503 IPR002110 GO:0005515
Seca8g03106 685 PRINTS Ankyrin repeat signature 377 392 IPR002110 GO:0005515
Seca8g03106 685 Gene3D - 2 118 - -
Seca8g03106 685 ProSiteProfiles Ankyrin repeat profile. 473 505 IPR002110 GO:0005515
Seca8g03106 685 PANTHER POTASSIUM CHANNEL AKT1 1 682 IPR045319 GO:0005249|GO:0006813
Seca8g03106 685 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca8g03106 685 PRINTS EAG/ELK/ERG potassium channel family signature 65 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca8g03106 685 PRINTS EAG/ELK/ERG potassium channel family signature 91 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03106 Seca-Chr8 88067823 88074102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03106 1 685 Ion Channels AT2G26650 60.375 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03106 K21867 - gmx:100809960 1062.75