Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03085 ATGTCTGATTCTGCGACGATGGTGGTGCACTCAAGCTCTTGGGCTACGGCACTCGTCAAGATCTCCCCTTATACCTTCTCCGCCATCGGCATCGCCATCGCTATCGGCGTCTCCGTCCTCGGCGCTGCCTGGGGAATTTACATAACTGGTAGTAGCTTGATCGGTGCTGCAATCAAGGCTCCCCGAATCACTTCCAAGAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGAGTTATTGTGGCTATTATTCTACAAACAAAATTAGAAAGTGTTCCAAAATCACAAATCTATGCACCCGAGTCTCTTAGAGCTGGATATGCAATCTTTGCTTCTGGAATTATTGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCTCAGAACTCCTCTCTCTTTGTGAAAATTCTTGTGATTGAGATATTTGGTAGCGCTCTTGGCCTCTTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACATGGCCTGCAAAAGTTTAG 549 0.4463 MSDSATMVVHSSSWATALVKISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPKSQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKV. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03085 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 26 88 - -
Seca8g03085 182 Pfam ATP synthase subunit C 113 172 IPR002379 GO:0015078|GO:0033177|GO:1902600
Seca8g03085 182 Pfam ATP synthase subunit C 29 88 IPR002379 GO:0015078|GO:0033177|GO:1902600
Seca8g03085 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 42 66 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca8g03085 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 151 174 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca8g03085 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 150 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca8g03085 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 68 92 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca8g03085 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 108 172 - -
Seca8g03085 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 8 176 - -
Seca8g03085 182 SUPERFAMILY F1F0 ATP synthase subunit C 22 91 IPR035921 -
Seca8g03085 182 Gene3D - 24 179 IPR035921 -
Seca8g03085 182 FunFam V-type proton ATPase proteolipid subunit 24 179 - -
Seca8g03085 182 SUPERFAMILY F1F0 ATP synthase subunit C 105 173 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03085 Seca-Chr8 87654012 87659117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03085 9 181 Primary Pumps ATPases(2) AT2G25610 91.908 5.06e-110 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03085 K03661 - tcc:18588964 310.457