Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03077 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCAGACCCTGTTGCTATTGATGCCCCAGGAGGATTTCTGTTTGAGTGGTGGTCAGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAGTTAATTAAGGCTAGGGAGCAACAGCAGCAGCAACAACAGCAACAACAGCAGCAGCCACAACCTCAGCAGTCACAACATCAACAGCAGCAGCAGCAGCAACAACAACACATGCAAATGCAACAGATCCTGTTACAGAGGCATGCTCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAGCAGCAGCAGCAGCCCCAGCAACAGCATCAGCAGCCACCACCACAACAGCAGAGTAGGGATAGAGCTCATCTCTTAAATGGTGGCACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTAGCAACAAAGATGTATGAGGAGAGGTTAAAACTGCCACTTCAGAGGGATTCTTTGGAAGATGCAGCAATGAAGGCAGGGAGATCTTCTGGCTGCCTAATTATATGA 663 0.4736 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQHQQQQQQQQQHMQMQQILLQRHAQQQQQQQQQQQQQQQQQQPQQQHQQPPPQQQSRDRAHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKAGRSSGCLII. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03077 220 SMART Lish 8 40 IPR006594 GO:0005515
Seca8g03077 220 Pfam LisH 10 36 IPR006594 GO:0005515
Seca8g03077 220 Coils Coil 126 148 - -
Seca8g03077 220 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Seca8g03077 220 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 210 - -
Seca8g03077 220 MobiDBLite consensus disorder prediction 92 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03077 Seca-Chr8 86585723 86587887 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Seca8g03077 LisH 2.4e-07 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03077 - - pvu:PHAVU_009G096600g 182.57