Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03072 ATGGCCGTGCTGAGAATGGCTCAGCATAACAATGCCAACAACAACGTTGGGAGCCAGAGCCAACAACAACAGCTAGTGAACACAGTGTTCCATGACTTTCTAGGCATGAAGAAGAAGAACCTCATCGATTCCAATGTCCTTCTTGCTGCTAATAAAACCCCCAATGTCCACGTCAGATCCTCTGACACCTCCCCCTCCCCTTCTTCCACCACCGTCTCCCGTGGCGGTGCCCCCTTCTCCACCACCTCTGACCTCGGTTCCGAAAGACAGGCAGGGAATCATCTTGAGGGAGTTCCTTTCTATGGCCCGAGGACTGATTTATCTGGAATTGAGATAGGTAACAGACTAGTGGGGAACAAGAGAAGTAATTCTGATTCATCTTTTATGGGTTCCTCTAGAGATGCCTTCCAAATGGTCCCTGATTCCTTTCAAAATTCACATTTGATGAAGATCCTCCGGAATGCAGCTGGAGGGGATCGCCATAGAAGGCCCAGTGATGAGGAAGTATTCCTTGGTATGCAATCACTGAAGCCAGGTTCTAGTTCTCAGACATTTCAGCCTCTCACTGGCACTAAGATTGATGCCAATAAATGGGAGCAGTCTATTCTCATGAACGTTGGCCCTTCCATGCAACATCCACCTCGTGGTGGTCAATTAACACCTTTTATGCACCAAATAACTTCAAACAAGATGAGGGATGCTGGTCCTTCATTTATTTCTCAGTCAGCTGCTGATGAAGGATCTAGAACTGGGATCAAGGGCCCTGGGATTTTGAGTTCTATAAACACAACCAGTGCTGCCGCTGAGAAAACTTCATCTGCAGTGCTGCTTGGGGGCAGTAGCAGACCGAAGCCTGTGACTAATATAGTAGACCCAGAATCTTCCACACCTCTGAGTCGACATGGATTGACATCTGCCAGCTGTCAGATGACTATTTTTTATGGAGGTCAAGCTCATGTGTTTGACAATGTCCAGCCTAATAAGACCCTACATTCTACCATACAGGCATTCCTCTTTTGCGCCGAAACACTAGGCACCGAAATCCTATTCCTATGTGATCTCAAGCCCAACATGATCGTGAGATCAGTGTTCGATGTTGTTGTGGAGAGGGACTCCAATGCAAAGATCTTGCACTGGCTCGATTCTATCAACTTGGCTCGTATTTGTTACAATCTTTTTTGTCAGCCCTCTTCTGTTCCTGCAATCCAATCCATCATGCCCTTTTGGGCAGATGTTATAATGGCTTTAGCTGGGTCAAATGGGGGATCTTGGTCCACAGCATTCTCACCCAAATCTTCTGCGAAGCTATTCCATGATAGTAACTTGCTAACTGGAGAAAATGAAACGGTTATAGTGAGTAACGAAGCACTCCCACAGGATCTTCGTGGGAGATTGTCTATTACCGGCAGTTCTAGTCGCGCCATAGGGACAGGTGATCGAGTAACTACTCTAACAGGGGTACATCAGGGAAGCATTGTAGCTAAAGATACAAGAAATCTGGTTCAAGCAGCAAATCCCAGTTCTGAAGATAAAAGAGCACAATGA 1545 0.4647 MAVLRMAQHNNANNNVGSQSQQQQLVNTVFHDFLGMKKKNLIDSNVLLAANKTPNVHVRSSDTSPSPSSTTVSRGGAPFSTTSDLGSERQAGNHLEGVPFYGPRTDLSGIEIGNRLVGNKRSNSDSSFMGSSRDAFQMVPDSFQNSHLMKILRNAAGGDRHRRPSDEEVFLGMQSLKPGSSSQTFQPLTGTKIDANKWEQSILMNVGPSMQHPPRGGQLTPFMHQITSNKMRDAGPSFISQSAADEGSRTGIKGPGILSSINTTSAAAEKTSSAVLLGGSSRPKPVTNIVDPESSTPLSRHGLTSASCQMTIFYGGQAHVFDNVQPNKTLHSTIQAFLFCAETLGTEILFLCDLKPNMIVRSVFDVVVERDSNAKILHWLDSINLARICYNLFCQPSSVPAIQSIMPFWADVIMALAGSNGGSWSTAFSPKSSAKLFHDSNLLTGENETVIVSNEALPQDLRGRLSITGSSSRAIGTGDRVTTLTGVHQGSIVAKDTRNLVQAANPSSEDKRAQ. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03072 514 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 112 445 IPR040390 -
Seca8g03072 514 SMART tify_2 303 343 IPR010399 -
Seca8g03072 514 MobiDBLite consensus disorder prediction 55 89 - -
Seca8g03072 514 ProSiteProfiles Tify domain profile. 303 338 IPR010399 -
Seca8g03072 514 MobiDBLite consensus disorder prediction 55 100 - -
Seca8g03072 514 Pfam tify domain 306 328 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03072 Seca-Chr8 86180745 86188663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03072 6 328 Tify Gene Family AT4G32570 35.152 3.37e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca8g03072 tify 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03072 - - ahf:112707837 496.893