Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03063 ATGAATAAAGAAAACGCTGCAGTTTGTGGTGTACGCGTCACTCGAGCAAGGGCTAGAGCCTTGGAAGGGGTATCTGCCTCCTCAAGACCCTCCTTCAAGAAGAAACACAAAAACGACGTAGTTCTTGGACTAAGCTCCAATGTACCTGCTGCCGATAAGAGCAGAGCAGTGCTAACAGATGTAACTAACATACGCAGAAAACCAAACGATAAGCGTATTAAGGCTTCAAAATCTCAGATAAGAGGAGGTTATAAGAAGAGAAACACAAAGGCAGGTTCAGATCATGTATCCAAACAAGTTTTGTCAATCCAAGAGGATGTTAGAGCAAAGATGGCTAAAGATTTATCCACAACAACAGTGGTGGAGTCAAATGACATCGCAGCACAAAGGGTGGGAAGCAGAGAGCCACTGCAGCGTTGTAGCATGAGAGAACCTGTTATGGCATATCCCCTGCTTTCAGTGCAGGACTCTCTGATGTCTGATGAACAACTTTGCTCTCCAAATAAAGACATAGATATGATTTGTGAGAAACGAAGAGCCTTAGATGGCTTGCACGTTGTGGATATTGACTCAGAGTTAAAGGATCGTCAAGTTTGGAGTTCATATGCCCCTGATATATACAATAATATACGTGTCAGAGAGTGTGAAAGAAGACCGTTAACCAATTACATGGACAAGTTACAGCAAGATATCACTCCGATCATGCGGGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGACGAATATAATCTAGTTCCAGACACACTTTACCTTGCAGTGAATCTCATTGATCGGTTTCTTTCTAAAAGTTTAATTCAGAAACAGAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTTATTTCATCAAAGTATGAAGAGATTGTGGCTCCTCGAGTGGAAGATTTTTGCTTCATCACTGATAATACATACACGAAAGCAGAGGTATTGAAAATGGAGACTGAGGTTCTAAATCTTCTGTATTTTCAATTATCTGTTCCCACAATCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTTCCTTATGTTGAGCTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCTTGATAGCTGCGTCTGCTGTATTACTTGCCAGATGGACCCTCAACCAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTACACAAATTACAAATCGTCAGAGCTTAAAACTACTGTCGTTGCACTGGCAGATTTGCAACTTAATACCAAAGGCTGTTGTCTTAATGCTATACGTGAAAAATATAAACAAGAGAAGTTCAAGGGTGTGGCAAATTTGCCTCCAATACCAGTGGAGTCACTTTTCTAG 1392 0.4145 MNKENAAVCGVRVTRARARALEGVSASSRPSFKKKHKNDVVLGLSSNVPAADKSRAVLTDVTNIRRKPNDKRIKASKSQIRGGYKKRNTKAGSDHVSKQVLSIQEDVRAKMAKDLSTTTVVESNDIAAQRVGSREPLQRCSMREPVMAYPLLSVQDSLMSDEQLCSPNKDIDMICEKRRALDGLHVVDIDSELKDRQVWSSYAPDIYNNIRVRECERRPLTNYMDKLQQDITPIMRGILVDWLVEVSDEYNLVPDTLYLAVNLIDRFLSKSLIQKQRLQLLGVTCMLISSKYEEIVAPRVEDFCFITDNTYTKAEVLKMETEVLNLLYFQLSVPTIKTFLRRFIQAAQSSYKVPYVELEFLANYLAELTLVEYSFLQFLPSLIAASAVLLARWTLNQSEHPWNPTLEHYTNYKSSELKTTVVALADLQLNTKGCCLNAIREKYKQEKFKGVANLPPIPVESLF. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03063 463 SMART cyclin_7 241 325 IPR013763 -
Seca8g03063 463 SMART cyclin_7 338 426 IPR013763 -
Seca8g03063 463 FunFam Mitotic cyclin 6 219 319 - -
Seca8g03063 463 Gene3D - 205 453 - -
Seca8g03063 463 SMART Cyclin_C_2 334 457 IPR004367 -
Seca8g03063 463 Pfam Cyclin, C-terminal domain 334 456 IPR004367 -
Seca8g03063 463 SUPERFAMILY Cyclin-like 333 457 IPR036915 -
Seca8g03063 463 MobiDBLite consensus disorder prediction 76 96 - -
Seca8g03063 463 Gene3D - 219 332 - -
Seca8g03063 463 SUPERFAMILY Cyclin-like 195 331 IPR036915 -
Seca8g03063 463 CDD CYCLIN_AtCycA-like_rpt2 334 448 - -
Seca8g03063 463 Pfam Cyclin, N-terminal domain 205 331 IPR006671 -
Seca8g03063 463 PANTHER CYCLINS 166 445 IPR039361 -
Seca8g03063 463 FunFam Cyclin A1 321 453 - -
Seca8g03063 463 ProSitePatterns Cyclins signature. 236 267 IPR006671 -
Seca8g03063 463 PIRSF Cyclin_A_B_D_E 13 461 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03063 Seca-Chr8 85822554 85828199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03063 10 463 Core Cell Cycle Gene Families AT5G25380 52.146 1.01e-145 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03063 K06627 - gmx:100777132 614.379