Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03061 ATGGGTGATGGACTAGGGGTCCTATTCAATGAGGACGCAGTTCTTATTGATTTTGTTCAACAAATCCGTGAGTTAGATCTTCGAATATTATGTCCAGTTAATGCGACTAATTTTCTATTTGCCTCATTAAGTGTAGCATGGTTTGTTTATAAGATGTATGGAAGGTCAAATGGATTTGCTATTCGTAATAGTTCAAAGCTTAGAAACAACACAGGAGAGGTCACACAACAAACTTTCTTGTGTAACCGTCAAGGGTTTAGAGAGGATAGGGGTTTGACGGAGGAGCAAAGGAAACAAGAACAAAAAGCACATACTCGATGTGAATGTAGAGCTTTATTCCGAGTTCACATTGACCTTGATTCTAGTAGATGGTATGTGAGGCGGTTTAATGACAATCACAACCATGATCTCTTGTGTGATAAAATGTGTGGGATGCTTTCTAGGCACAGAGCAATGAGTGAGGGGGACATTTTTACAAATGAATAA 486 0.3889 MGDGLGVLFNEDAVLIDFVQQIRELDLRILCPVNATNFLFASLSVAWFVYKMYGRSNGFAIRNSSKLRNNTGEVTQQTFLCNRQGFREDRGLTEEQRKQEQKAHTRCECRALFRVHIDLDSSRWYVRRFNDNHNHDLLCDKMCGMLSRHRAMSEGDIFTNE. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03061 161 Pfam FAR1 DNA-binding domain 50 138 IPR004330 -
Seca8g03061 161 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 40 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03061 Seca-Chr8 85692252 85692737 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g03061 FAR1 5.2e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03061 - - tpra:123913749 146.362