Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03059 ATGGAGCGGCCCGGGAGCTTCAGCGGCAGTCAGCATATTATAGAAATAGCCGGGAGCCCAGATGCTTCTACGTCCACCCCACCCCGTGATAGACATATTAATGGTATAGATGCGTCACAGCATGAAGAAAGAATAAATATTGTGCGGTTGTCTGTCAGTCAGCCTTCAGTTTCAACCTCTGGTGTATCTAATGGATTGAATAGTAGGAATTCTTCATTCATAAGACGTGGGGACTCTCGTCGGAATAGAAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAGCTAGTCCTCTTAGTTGGCCAGATTGTTGCATCTATCGCTGTTTTGTCATTGTCAAGGCATGAGCATCCGCGTACCCCGTTGTTTCAATGGATAGTGGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTCTTCTTTATTGGCGATATTATCACCATAACCATATGCGAGAGCAAGATTCTTCTCAATCACGTCAAACATCTCCACGGATTAATGATCCTTCAGGGATACTTCTTTCCAGTTCCAGAACTAACGGGGGAGACAATGGTCAGGCTGCTGCTTCCTCCAGAAGCAATCAAGATTCAGTATTGATGAGCAGAAGCCTGCAACACAGAATGAAGACACTCGTGGAATACTTCAAAATAACCTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGAGGACATTCATCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTATTTCTTGCATTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTCTGCTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACACAAAACAGAGGGGCAACTTCCGAATCCATTAATGCTCTGCCAACTTACAAGTTTAAATTGAAGAAAAATAAACGAAATGGTGAAAGCAACTCAGCTGCTGCTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATCTCTGGAGAAGATGCAGCCTGCTGCATCTGTCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGCTCTCATCTTTTCCACAAAGACTGTGTTGATAAGTGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAGGTCGGTGAAAATATGGTCACCGGAGAAGCTGCCAGCCAAATACGGGGCGAGAGCAGGGTTGAGAATAGCCTCCCCAATACCTCAGTTTAA 1254 0.441 MERPGSFSGSQHIIEIAGSPDASTSTPPRDRHINGIDASQHEERINIVRLSVSQPSVSTSGVSNGLNSRNSSFIRRGDSRRNRSPVHSGLWISIELVLLVGQIVASIAVLSLSRHEHPRTPLFQWIVGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQTSPRINDPSGILLSSSRTNGGDNGQAAASSRSNQDSVLMSRSLQHRMKTLVEYFKITLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLTQNRGATSESINALPTYKFKLKKNKRNGESNSAAAEGGIVAAGTEKERVISGEDAACCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENMVTGEAASQIRGESRVENSLPNTSV. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03059 417 MobiDBLite consensus disorder prediction 59 85 - -
Seca8g03059 417 FunFam E3 ubiquitin-protein ligase 328 395 - -
Seca8g03059 417 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 389 - -
Seca8g03059 417 ProSiteProfiles Zinc finger RING-type profile. 345 386 IPR001841 -
Seca8g03059 417 MobiDBLite consensus disorder prediction 171 193 - -
Seca8g03059 417 MobiDBLite consensus disorder prediction 59 73 - -
Seca8g03059 417 SUPERFAMILY RING/U-box 337 392 - -
Seca8g03059 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 394 IPR013083 -
Seca8g03059 417 SMART ring_2 345 385 IPR001841 -
Seca8g03059 417 Pfam Ring finger domain 344 386 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03059 Seca-Chr8 85624868 85633655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03059 75 392 C3H Transcription Factor Family AT1G80400 58.951 9.92e-141 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03059 - - gmx:100778728 697.197