Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03045 ATGGATTCTCTTATGGGACCACAATATGTCTGTACAACTTTCTCGACATTTGTCTGCACAAATTGCAGTGGAATACATCGAGAGTTTACCCATAGGGTAAAATCTGTTTCAATGGCTAAATTTACTCCAGAAGAAGTCACTGCTCTTCAAGCAGGTGGAAATGAGAGAGCAAAGCAGATTTATTTCAAAGAATGGGATCATCTGCGTCATTCTTACCCTGATTCCTGTAATATACACAGACTTCGAGATTTTATCAAGCAGGTCTATGTGGAAAGAAGATTTACTGGTGAAAGGAGTGGTGGTGCCACTGCCAATCTTCCCAGGATTAGATTGAATAACAAGGAGCCCTATGAAAATAGTACTAGGAAGAGTAATTCATTGCGTTTAGAGTTCAAGAGTCCACATTCAAGTCCTGGTGTAAAAAGTGATGACACTGGTTTCAGATATTTATATGATGAAAGCAGAAGTCCAAGATATGTGCAAAAATGTTCAAGGCGTGGCAGTATAGGCAGAAGTCCTATAAAATTTGAGGTTGTTGATGACAGGTTCCGAGATGATGAGTATAGAAACCGCAGGGTTACAAATATAGGATCAAAGCTAAGACATCTTTCACTTGATGGTCAGAAGAGTGTGGACAGATCCCAACCTCCTGTTTTACGCCCTTTGGGTGAAATAATAGGGGAAAGTGCTTCATCTCTCCAAGTAACACCTTCTGGTGGGGAGGGTTCTGTTGAGGAAAATCCATCAGAACAAATAAGTAATAATCCAGAAAGCTTCATTGATTTGAGTATTAAGCCTAAGGCTTTTGATGCTGTTGATGGGGTTGGACCAGAAACACCTCATATGTCACAAGCAAGTGAAAGTAACTGGGCCAAATTTGAAGCTCCTAAAACTCCAGACACCAGTACCTTATCTTCTACAACAGAGGCAACACCTGAAGCAACATTTGCAAATGCTATAGACCTTTTACTTTTTGAATTGTCAGGCCCTTTGGTTCCAACTTCTGGTGGCAAGTCAGAAGTCCCAAGTGGTGACAATGTTCCAACATGGGATTTTCCACCTACTTCAATGGGGCACACAACTGCTTCACCAAACAGTACTGGTGTTTCCTCATTTACATCAACCACTGCCACTGAGCTAACACATCCTTATAAAGCAGCTCCTCCACAAGCTGAGCCACATGATGCAGAACACTTCATTGAAGTTTCACATGCACATAAACCATCAAGCATTCCTTCTGTATCAGCAAGTTGTAGTTCAACAACACAACCAACAAATGCACCAGTCAAAGCTGTAGTTTCAAATAATCAGCCATCAGTTTCTCCTATTACAAATGACTCTTCACGTGCTTTTACTGAACCATTTTCTCAAACCACCTCAAAACCTATTCAAGACACCAGACCTGATGTTGGTTCCCAACCTAGTAGAGTGGAAACCAAGTCTATTGGAAGAAAGGAACTTCCAGAGGACCTTTTTACTGCAAGCTACTTATCTGGCCCTGCAACACTGGCAGGTTGGCAGAATGTTCAACCTCATGCCATGGGATATGGCATGCAGTATTATCCTAATGCAGTGACTCCCTCAGCACTTCCCATTGCACCAATGTCCATAAACCCATTTGAAGTAACTGAGGGGAGAAATCTAATCCATACCTCATCACTTCCTACTATGGCATCTTTGCAAGGTGTACTGCCAGCTGTGTCATCCAGAACAACAGGACTAATACATGCTTCAAGCCTTGGAACTTTAGAAGCAGCGGTGCCTCAGTCCACAAGTTATGCATCACCAGTTCCTCCACAATCTCCCTTTGCATCTGGTGTTCCTACTGGTGTGTACTATGATCAAGTCAATGACAAGCAACCAGCTAGGCCACAAAAAGTTGGCAGCTTCAATGGTAATTTATCTGGTTTTGGATCTCTAGACACCATTCAACAGTCATGTGGGGGATATGGGACACCCAAAACTCCAGATTCTTTTTTCAGTGCAAGAGGAAACCCATTTGAATAG 2007 0.4225 MDSLMGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKEWDHLRHSYPDSCNIHRLRDFIKQVYVERRFTGERSGGATANLPRIRLNNKEPYENSTRKSNSLRLEFKSPHSSPGVKSDDTGFRYLYDESRSPRYVQKCSRRGSIGRSPIKFEVVDDRFRDDEYRNRRVTNIGSKLRHLSLDGQKSVDRSQPPVLRPLGEIIGESASSLQVTPSGGEGSVEENPSEQISNNPESFIDLSIKPKAFDAVDGVGPETPHMSQASESNWAKFEAPKTPDTSTLSSTTEATPEATFANAIDLLLFELSGPLVPTSGGKSEVPSGDNVPTWDFPPTSMGHTTASPNSTGVSSFTSTTATELTHPYKAAPPQAEPHDAEHFIEVSHAHKPSSIPSVSASCSSTTQPTNAPVKAVVSNNQPSVSPITNDSSRAFTEPFSQTTSKPIQDTRPDVGSQPSRVETKSIGRKELPEDLFTASYLSGPATLAGWQNVQPHAMGYGMQYYPNAVTPSALPIAPMSINPFEVTEGRNLIHTSSLPTMASLQGVLPAVSSRTTGLIHASSLGTLEAAVPQSTSYASPVPPQSPFASGVPTGVYYDQVNDKQPARPQKVGSFNGNLSGFGSLDTIQQSCGGYGTPKTPDSFFSARGNPFE. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03045 668 SMART arf_gap_3 1 102 IPR001164 GO:0005096
Seca8g03045 668 MobiDBLite consensus disorder prediction 118 132 - -
Seca8g03045 668 MobiDBLite consensus disorder prediction 335 376 - -
Seca8g03045 668 SUPERFAMILY ArfGap/RecO-like zinc finger 5 95 IPR037278 -
Seca8g03045 668 MobiDBLite consensus disorder prediction 281 309 - -
Seca8g03045 668 MobiDBLite consensus disorder prediction 406 480 - -
Seca8g03045 668 CDD ArfGap_AGFG 6 94 - -
Seca8g03045 668 MobiDBLite consensus disorder prediction 349 376 - -
Seca8g03045 668 MobiDBLite consensus disorder prediction 270 309 - -
Seca8g03045 668 PRINTS HIV Rev interacting protein signature 15 32 IPR001164 GO:0005096
Seca8g03045 668 PRINTS HIV Rev interacting protein signature 33 54 IPR001164 GO:0005096
Seca8g03045 668 Pfam Putative GTPase activating protein for Arf 6 96 IPR001164 GO:0005096
Seca8g03045 668 MobiDBLite consensus disorder prediction 228 256 - -
Seca8g03045 668 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 102 IPR001164 GO:0005096
Seca8g03045 668 MobiDBLite consensus disorder prediction 648 668 - -
Seca8g03045 668 MobiDBLite consensus disorder prediction 229 256 - -
Seca8g03045 668 MobiDBLite consensus disorder prediction 408 478 - -
Seca8g03045 668 Gene3D Arf GTPase activating protein 3 104 IPR038508 -
Seca8g03045 668 PANTHER ARFGAP/RECO-RELATED 5 668 IPR044820 GO:0005096
Seca8g03045 668 MobiDBLite consensus disorder prediction 101 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03045 Seca-Chr8 85098476 85106764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03045 7 101 C2H2 Transcription Factor Family AT3G07940 30.000 2.21e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03045 - - gmx:102660856 747.658