Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03015 ATGGGAGAGGTGGCAGTATTGCAATCTGAGCCTCTTCAGTTTGAATGCAATGACATGAAACATGTGACTGAGAATGACGTTTATCCTCCAGAACCAAATGTGGAGCAGTTGCCTGGAGAAGAATCAAGGATCAATGACTTGCGAGAGAAAGGATATATGGAATATGGATGCCAACATTACCGAAGAAGATGCCGTGTCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACATTGATCAGAAGCATAGACATGACATTCCTCGACACCAAGTCAAACAGGTGATATGTTCACTCTGTGGCACTGAACAAGAGGTTCAGCAAGACTGTGTTAATTGTGGTGTTAGTATGGGCAAGTACTTCTGTGGGATATGCAAGCTCTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGTTGCGGAATTTGCAGAACTGGAGGACGCGAGAATTTCTTTCATTGCTACAAGTGTGGTTGTTGCTACTCAACTCTGCTTAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCACTGTCATGCCATGTGGACATACAATCCATAAGAGCTGTCTGAATGAAATGAGAGAACATTTCCAGTATGCATGTCCTCTCTGCTCGAAGTCAGTTTGTGACATGTCAAAGGTTTGGGAGAAATTTGACATGGAGATTGCTGCCACACCAATGCCTGAGCCATATCAAAATAAAATGGTTTGGATCTTGTGCAATGATTGCGGCAAAACTTCTCACGTGCGGTTCCATTTTGTTGCTCAGAAATGCCTGAACTGCAAATCCTACAACACACGACAGACAAGAGGCTGA 909 0.4301 MGEVAVLQSEPLQFECNDMKHVTENDVYPPEPNVEQLPGEESRINDLREKGYMEYGCQHYRRRCRVRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCGTEQEVQQDCVNCGVSMGKYFCGICKLFDDDISKQQYHCSGCGICRTGGRENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNKMVWILCNDCGKTSHVRFHFVAQKCLNCKSYNTRQTRG. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03015 302 Gene3D - 264 302 - -
Seca8g03015 302 SUPERFAMILY RING/U-box 192 241 - -
Seca8g03015 302 ProSiteProfiles Zinc finger RING-type profile. 193 236 IPR001841 -
Seca8g03015 302 ProSiteProfiles Zinc finger CHY-type profile. 50 126 IPR008913 GO:0008270
Seca8g03015 302 SUPERFAMILY CHY zinc finger-like 54 127 IPR037274 GO:0008270
Seca8g03015 302 CDD RING-H2_Pirh2-like 192 236 - -
Seca8g03015 302 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 43 301 - -
Seca8g03015 302 Pfam CHY zinc finger 57 138 IPR008913 GO:0008270
Seca8g03015 302 SUPERFAMILY Zinc hairpin stack 129 186 IPR037275 -
Seca8g03015 302 ProSiteProfiles Zinc finger CTCHY-type profile. 128 192 IPR017921 -
Seca8g03015 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 238 IPR013083 -
Seca8g03015 302 Pfam Zinc-ribbon 240 298 IPR039512 -
Seca8g03015 302 SMART ring_2 193 235 IPR001841 -
Seca8g03015 302 Pfam Ring finger domain 192 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03015 Seca-Chr8 84487609 84491757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03015 55 302 C2H2 Transcription Factor Family AT3G18290 39.764 8.05e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03015 K10144 - gmx:100803569 617.461