Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03012 ATGGACGACGAAGCGAATCAAAATCAAGGCCAAGCTCCTCCGCCACCTCCGCTGGTGGAATCTCAGTCGCACGACGGCGACGGTGAAGAAGAAGATGTTGAGGAGGAGGAGGAGGAGGAGGAGTCGAAGAAGGAAGAAGAGGAGGTCATTGCAAAAGCTAACAAGCTAATGGATAAGATCACTGGTTCTCCTGATAACCCTAAACCCACCGTCCTCCACGCCCTTGCATCCATTCTTGAAATCCAGGAGTCACGATACATGGAAGAAAATGACCATGCTTCATCCAGTAATGCCCGTGCTTCTCATAACATTGGGCGACTTGGGAGCTTAATCCGGGAGAATGATGAGTTCTTTGAGTTGATATCTTCAAAGTTTCTGTCAGAAACAAGATACACGACATCCATTCGGGCTGCTGCTGCCAGGCTTCTCCTGAGCTGTTCACTAACTTGGATTTATCCCCATGTTTTTGAGGAACCTGTCCTGGAGAACATCAAACATTGGGTAAAGGATGAGAATACTAGTCTGTCTGCTGAGGAACAAAATCTGAAACGTATTCCAGGGAGAAAGGAAGCCTCGGATTCTGAAATGTTGAAAACCTATTCCACTGGTCTTCTCGCTGTGTGTTTAGTCGGTGGAGGTCAAGTGGTTGAAGATGTCTTCACATCTGGTTTGCCAGCCAAGTTTATGCGATATCTTCGCTTGCGTGTGCTGGGGGAGACAAGTAGCAGCCAGAAAGACACTAATCCTTTAACAGAGAGTAGGCATGCATCTGGGAATACTTCAATGAGAGGTAAAGATGATGGTCGCAACAGATTTCGACAGGTCCTGGAATCAGGTCATTTTGATGATGCAAAGATGATTGACGAGAGATCGTTAGATGATCGAATTCGTGAAAGGGATCCAGATAAAAGTGTTAGTGGACAAATTTGCCAAGAAGATTCTTGTATGGATGAACCTCCTGATGGGTTGAGTGAAGGAGCTGGCATCTGTGAGGTAGGCACTGATGGAGAGGATAGATGGCACTGTAGAGATATACGTGATGGAAGGGTAAAATATGGTGACCATGAAGACAATGCTAGAGATGACTCTTCAAAACGGCGTGTGAATCGTGGATGGGGAAGATCCAGAGAGAAGGGAAGGGTCAATGAAGGGAATGTAGAAAGTGAACCAGTTTTGTCATCTCCTGGTTCTGGTAGTCGATTAATACAGGGAAAGAGTGTTAGGGATAGGAACATTTTAAGGAATGTCGATATCAAAATGGTGCCTGATTCTAAGAAGAGTGTTGTCAGGATCACTTCCGAGGCAAATGTTTTGGGAAGAGATGATAATGATGATTGTTTCAAAGAGTGCTATATTGGAAGTAAAGATATCTCTAATCTTGTTAGGAAAGCAGTCCAAGCTGCCGAAGCTGAAGCTAGATCTGCCAATGCACCTGAAGAAGCTGTCAAGGCAGCTGGTGACGCTGCTGCTGAACTTGTTAAAACTGCAGCTTCAGAGGAATTCAAATCCACTAATGATGAAGAAGCTGCTGTTTTAGCTGCTTCAAAAGCTGCATCAACTGTTATTGATGCTGCATCTGCTGTTGAAGTTTCAAGGAGCTCCATCAGCATCAATAAGGAGATTGAGAATGCAGATGTCCAAGACAGAGAATCTGGTGAGGAAGTTGAAGATTACTTCATCCCAGATACTCAATCACTTTTGCAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGCTACTCGGAGAATATGTAGAAGTTCTTGGCCCTGTATTACATGAGAAAGGGGTAGATGTGTGTCTTGCACTTTTGCAACAGAATTCTCAACATCGAGAGGCTTCCAAAGTTGCCCTACTGTTGCCTGATGTCATGAAGCTGATCTGTGCTTTGGCTGCTCATAGGAAGTTTGCTGCACTATTTGTGGACCGTGGGGGCATGGAAAAGCTTCTTGCTGTTCCTAGAATGGCTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATCGGTTCTCTGCAGGGGATAATGGAAAGGGTTTGTGCTCTTTCATCAGATGTTGTTTATCATTTGGTTGAGTTGGCTCTCCAGCTCCTTGAATGCAACCAAGACCAAGCTCGGAAGAATGCAGCATTGTTCTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATGCTTTTGATGCCCAGGATGGATTACAGAAATTACTGGGCCTTCTAAATGATGCTGCTTTGCTAAGATCAGGAGTAAATTCTGGGGCTTTGGGTCTATCCAACTCAGGATCACTTCGAAATGATCGATCATCTGAGGTGCTGACATCATCTGAGAAGCAGATAGCCTATCATACTTGTGTTGCTTTGCGGCAATACTTCAGAGCTCATCTCCTTTTGTTAGTGGATTCCATTCGTCCAAACAAAAGCAACCGTAGTGCTGCTAGGAATCTTCCAAGTGTAAGGGCAGCATACAAGCCACTTGACATTAGCAATGAAGCAATGGATGCTGTACTCCTGCAATTACAAAAAGATCGGAAGCTGGGTTCTGCATTTGTGAGAACACGTTGGCCAGCAGTTGATAAGTTCTTGGCATGTAATGGGCATATTACTATGCTGGAATTGTGTCAGGCCCCACCTGTGGAACGGTATTTGCATGATTTGCTTCAGTATGCATTGGGTGTTCTTCATATTGTTACATTGGTGCCTAGCAGCCGCAAGATGATTGTAAATGCAACATTAAGCAATAATCGTGTGGGTACAGCAATCATTCTGGATGCTGCAAATATTGCTAGTAATCATGTGGACCCTGAGATAATTCAGCCTGCTTTAAATGTATTAGTCAACCTTGTTTGCCCTCCACCTTCAATCAGTAACAAACCAGCTTTGGTTTCACAAGGCCAGCAGTCTGCTTCTGCCCAAACCTCAAATGGTCCTCTGTCGGAGACTAGAGATAGAACTTCTGAACGAAATGTCTTAGATCGATCTGTTAATATTTCCAGTCAGACTGATCCGAGGGAGCGGAATGGGGACTCTAGTGCTGTGGATCGAGACAGTGCTGCAGCAGTTAGTACACAAACTGTTAATAGCACTCCACAGACTGCTGTCCTGGCTGCTTCTTCAGGATTGGTTGGAGACCATAGAATATCTCTGGGTGCTGGAGCAGGCTCTGCGGGCCTGGCTGCACAACTGGTACAAGGATATCGTCAAGCAAGAGAGGCTGTTCGCGCTAATAATGGAATAAAGGTTCTTTTGCATCTCCTCCAACCACGCATATATTCACCTCCTGCTGCTTTGGACTGCCTTCGTGCTCTAGCATGTCGAGTTCTGCTTGGTTTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTACAGGTTGGGAAGAAGCTGTCAGAACTAATTCGAGATTCAGGCAGCCAGACACATGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAAGCTGCAATTGAGTTAATTGGGGTGAGCATCTTCACATTTTTTTTGGAAATTGTCACTAACTCAGGGCGTGCAAGTACATTAGCGGCTACTGATGCAGCTACTCCTACCTTAAGGCGCATAGAAAGAGCAGCTATTGCTGCTGCCACTCCTATAACATACCACTCGAGGGAACTTTTGCTCCTTATTCATGAACACCTCCATGGATCTGGATTGTCACAAACTGCTTCTATGTTGCTTAAAGAAGCTCAATTAAAACCTTTGCCATCAGTGATTGCTCCATCATCTCTTGCACAACAACCTTCCACACAGGAAGCTCCTCCAGTACAACTTCAGTGGCCTTCTGGTCGTGCTCCTGGATTTCTGTCCAACAAATTAAAGCTTAATGCAGGGGATGGGGATTTCAACACAAAGATTGATTCAGCTTTCTCCTCAAAGAAAAAATCACTGAATTTCTCTTCTTCCTTTAGTTCAAATTCAAGACATCAACTTGTTGATTCTCGGCAGTCATCTGTCCGAAAATTGTTAGGTACTGGTAAAGAGTCTTTAGAAACCGCAGCAGTATTAGAGACTCCACCAGAGCCTTTGGGGAAACATAACATTGATGCTGAACCTCAGTATAAGACTCCAATCATCTTGCCGATGAAACGGAAACTATATGAGTTAAAGGATATAGGAGTGTTGTCATCATCTGGAAAGCGACTATATACTGGGGATCAAGGAATTCGTTCTCCTATTTGTCCAACTCCACATTCGATTCGTAGAAGTAATGTGCAAACTGATGCTATTGGGCTTTCTACACCAAGTTCCAACCTGAGAAATCAACAAGGACGTTCTGACTATGTGGATGAGAATCAAAACAGTATGTCAACTCTAGGTCAGGTTACACCATCCTCCCTAGTCATAAATGATCTTCAGCCTAACAATTCAGAGCGTATAACATTAGATTCTCTAGTGGTTCAGTATTTGAAGCATCAACACCGCCAATGCCCAGCTCCTATTACTACTCTTCCTCCACTGTCTCTTTTACACCCTCATGTTTGTCCTGAACCCAAGCGAAGCCTTGATGCCCCTTCTAATGTGACAGCTCGCCTTGGTACACGTGAATTTAAACTAATATATGGTGGAGTGCATGGGAATCGCAGGGATCGTCAATTTGTTTATAGCCGATTCAGACCATGGCGCACCTGCCGTGATGATGCTGGTGCCTTATTAACTTGCATATCCTTTGTTGGGGACTCTTCTCATATTGCTGTTGGGAGCCACAATGGAGAGCTCAAACTTTTTGATGCTAACAACAACAATGCGGTGGAGAGCTTTACAGGTCACCAGTATCCGTTGACACTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAACTGTTGCTTTCTTCAAGCTCTCAAGATGTAAGGTTGTGGGATGCCTCATCAATTTTGAGTGGTACTACCCATTCATTTGAAGGTTGCAAGGCTGCCAGATTTAGCAATGCTGGGAATATTTTTGCAGCCTTGTCATCAGAATCTTCACAACGGGAAATCCTCTTGTATGATATCCAGACATGTCAGCTAGAGTCTAAGTTGTCAGATACTTCAACAAATTTTACAGGTCGGGGTCATGTTTATTCTTTAATCCACTTTAACCCTTCTGACTCAATGCTGCTTTGGAATGGTATCTTATGGGACCGGCGGGTTTCTGGGCCTGTCCATCGCTTTGATCAGTTCACAGACTATGGTGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCCGACTGCTTCGCAGTGTACCTTCATTGGATCAAACAGCAATAACATTTAATGCTCATGGCGATGTTATATACGCTATCCTAAGGAGAAATATTGAAGATGTAATGTCAGCAGTCAACACACGACGTGTCAAGCACCCTCTCTTTGCAGCTTTCCGCACTTTGGATGCAGTGAATTATTCTGATATTGCTACTATCCCTGTGGATCGCTGTGTTCTTGATTTCACAACTGAACCAACAGATTCATTTGTTGGGTTGGTTACAATGGATGATCAAGATGAAATGTACGCCTCAGCCAGAATCTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCCGATCCTGATGATGCGGAAAGTGAAGAGGAAGATGAGGATGAGGATGAAGATGCTGATGTAGATCCTCTTTTAGGCCCTGGTTTTGGTGGAGACAGCGAGAGTGATGGTGATGACATAAGTAATGATGATGATAGTGTAAGTGAGCTTGATGATGAAGATGGAGATTTCATTACGGATGATGTAGACTTTGAAGGAGGACCTGGCATGCTGGACATTGTGACAGAAGGCGACGAGGATGATGATGATAGTGAAATACTTGGATCTTTTAGTAGTGGCGAAGAAGATTTTGGCTTTGACTATTAA 5898 0.4418 MDDEANQNQGQAPPPPPLVESQSHDGDGEEEDVEEEEEEEESKKEEEEVIAKANKLMDKITGSPDNPKPTVLHALASILEIQESRYMEENDHASSSNARASHNIGRLGSLIRENDEFFELISSKFLSETRYTTSIRAAAARLLLSCSLTWIYPHVFEEPVLENIKHWVKDENTSLSAEEQNLKRIPGRKEASDSEMLKTYSTGLLAVCLVGGGQVVEDVFTSGLPAKFMRYLRLRVLGETSSSQKDTNPLTESRHASGNTSMRGKDDGRNRFRQVLESGHFDDAKMIDERSLDDRIRERDPDKSVSGQICQEDSCMDEPPDGLSEGAGICEVGTDGEDRWHCRDIRDGRVKYGDHEDNARDDSSKRRVNRGWGRSREKGRVNEGNVESEPVLSSPGSGSRLIQGKSVRDRNILRNVDIKMVPDSKKSVVRITSEANVLGRDDNDDCFKECYIGSKDISNLVRKAVQAAEAEARSANAPEEAVKAAGDAAAELVKTAASEEFKSTNDEEAAVLAASKAASTVIDAASAVEVSRSSISINKEIENADVQDRESGEEVEDYFIPDTQSLLQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSQHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGMEKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALSSDVVYHLVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDAQDGLQKLLGLLNDAALLRSGVNSGALGLSNSGSLRNDRSSEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAARNLPSVRAAYKPLDISNEAMDAVLLQLQKDRKLGSAFVRTRWPAVDKFLACNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGTAIILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPALVSQGQQSASAQTSNGPLSETRDRTSERNVLDRSVNISSQTDPRERNGDSSAVDRDSAAAVSTQTVNSTPQTAVLAASSGLVGDHRISLGAGAGSAGLAAQLVQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTHGTEQGRWQAELSQAAIELIGVSIFTFFLEIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLHGSGLSQTASMLLKEAQLKPLPSVIAPSSLAQQPSTQEAPPVQLQWPSGRAPGFLSNKLKLNAGDGDFNTKIDSAFSSKKKSLNFSSSFSSNSRHQLVDSRQSSVRKLLGTGKESLETAAVLETPPEPLGKHNIDAEPQYKTPIILPMKRKLYELKDIGVLSSSGKRLYTGDQGIRSPICPTPHSIRRSNVQTDAIGLSTPSSNLRNQQGRSDYVDENQNSMSTLGQVTPSSLVINDLQPNNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKLIYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCISFVGDSSHIAVGSHNGELKLFDANNNNAVESFTGHQYPLTLVQSFVSGETQLLLSSSSQDVRLWDASSILSGTTHSFEGCKAARFSNAGNIFAALSSESSQREILLYDIQTCQLESKLSDTSTNFTGRGHVYSLIHFNPSDSMLLWNGILWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTAITFNAHGDVIYAILRRNIEDVMSAVNTRRVKHPLFAAFRTLDAVNYSDIATIPVDRCVLDFTTEPTDSFVGLVTMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDEDEDADVDPLLGPGFGGDSESDGDDISNDDDSVSELDDEDGDFITDDVDFEGGPGMLDIVTEGDEDDDDSEILGSFSSGEEDFGFDY. 1966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03012 1965 SMART Lish 1207 1239 IPR006594 GO:0005515
Seca8g03012 1965 MobiDBLite consensus disorder prediction 1852 1965 - -
Seca8g03012 1965 SUPERFAMILY WD40 repeat-like 1544 1776 IPR036322 GO:0005515
Seca8g03012 1965 MobiDBLite consensus disorder prediction 387 401 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 242 258 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 25 44 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 1 49 - -
Seca8g03012 1965 FunFam DDB1-and CUL4-associated factor homolog 1 1540 1867 - -
Seca8g03012 1965 SMART WD40_4 1542 1582 IPR001680 GO:0005515
Seca8g03012 1965 SMART WD40_4 1630 1668 IPR001680 GO:0005515
Seca8g03012 1965 SMART WD40_4 1585 1625 IPR001680 GO:0005515
Seca8g03012 1965 MobiDBLite consensus disorder prediction 351 384 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 957 978 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 1938 1953 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 242 269 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 351 406 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 292 330 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 1866 1886 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 957 1023 - -
Seca8g03012 1965 Gene3D - 1543 1867 IPR015943 GO:0005515
Seca8g03012 1965 ProSiteProfiles LIS1 homology (LisH) motif profile. 1207 1239 IPR006594 GO:0005515
Seca8g03012 1965 MobiDBLite consensus disorder prediction 292 306 - -
Seca8g03012 1965 Coils Coil 26 56 - -
Seca8g03012 1965 PANTHER VPRBP PROTEIN-RELATED 39 1959 IPR033270 GO:0016567
Seca8g03012 1965 MobiDBLite consensus disorder prediction 989 1004 - -
Seca8g03012 1965 MobiDBLite consensus disorder prediction 1900 1925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03012 Seca-Chr8 84253700 84265063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03012 1569 1775 U-box Gene Family AT1G04510 24.779 4.65e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03012 K11789 - gmx:100796030 2739.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03012 8 84253700 84265063 Seca8g03012 8 84253700 84265063 ECH