Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02999 ATGAGTTTTCTAAACTCTCTCTCTGGCTACTGGTGGGATGATCCATGGTACTCATCTTCAACCTACTACTACCCCTCTGCTGCTCCTGCTCCTCCATCTTATTTTACTAAGATGGTATCAGAGCTCCATCCATGGAGCTCACCTCGTTTCAAGAAGAAGAAGAAACAATGTTGTGCGAAGAAGCTATCTATGATTGCTGAGAATCTTGCAGAGGTGTTTTCTTCTTCTACTGCTGCAACAACCACTCCTTCATTCTCATCTGCATTTGCCGCTGCTCCATCCTCTACGCTGCTCTCTGCTACAGAGCGTCCTCCTCCCTTGGTCTCTATTCTACACAAGGATTTATTCTTCGTTACTGATATTTGCAAAGGATCTGCAGCGAAATTGGAATGGAAATCGTCACCAGATCCGTTCATTTTTGGAAGCTTTGAATTAAAAGAATATCAAACGCCACAGAATGTCATTGCTCGCTTCAATGGCGGTCAGCAGCAGCTTCCCTCCGCCGTTGCGTGTCCGCCTCCTCCGGCTTCTCCCCAACGCCGTCCTTCTTCCGGATTTGCTCTTACATCTCCTTCTCGTTCTTGGCAGCCCGCTTCTTCTGGTCGCAGTGGTCCATCCCCGTGCGGAACTCTCGAAACCGAAGTCAACCTAACCGTCTACGAGATCTTCGTCGCCACTTGTCGCACCTCCTCTGGTAAGCCTCTAAGTTTCGTTCCCAAATCGTCCTCGAACTCTAAGAATTTCGTGGCAGAAAAGGATCTGTGTACACAGCTTCAGTTTGATGAAAGGTTCACTGCTATTGGAGCTCGTATACCGAAAGGATTTGACAGTGGTGGCTACAACATCAAGACCGGACCTGACTATTCAATTGAACTCATGAAATTTGATATGAGTGGTTCAACTGATGCCATTAAAGTTGGTCCCTATAGCTTGCCAGGAGCCCGAGCAGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTTACACGATTGAGCATGAAGAGTTCATGGAGGATAATAATTGCCCACTTGATTCTGTTACTTACAATGAGCTTGTGGCAGCATATGTAAGAGCTGGGTATCATGATGATGGTGATGCTGTTATTGATACAATGACAAGCAAAGGAATAATGCCAAATGCTATCACTTATACCACTGTAATAAATGCCTATGCTAAGACAGGAAAGGGGGACAAGGCGTTGAAGTTGTTCAACCAGATGAAGGAATTGGGTTGTGTTACAGATCGTTGGGGGCCAGGAAAGATGGAACTTTGTCTTGGAGAACCTGGTGCAGCTGTGATGCTGGCAGAGTTAGCAATAGAAGTTGTTTTTGGTGTCCTTTCTTGGTTTCAAGTTGGTATTGGTTAA 1368 0.4598 MSFLNSLSGYWWDDPWYSSSTYYYPSAAPAPPSYFTKMVSELHPWSSPRFKKKKKQCCAKKLSMIAENLAEVFSSSTAATTTPSFSSAFAAAPSSTLLSATERPPPLVSILHKDLFFVTDICKGSAAKLEWKSSPDPFIFGSFELKEYQTPQNVIARFNGGQQQLPSAVACPPPPASPQRRPSSGFALTSPSRSWQPASSGRSGPSPCGTLETEVNLTVYEIFVATCRTSSGKPLSFVPKSSSNSKNFVAEKDLCTQLQFDERFTAIGARIPKGFDSGGYNIKTGPDYSIELMKFDMSGSTDAIKVGPYSLPGARAGGFGGQVILPLAYTIEHEEFMEDNNCPLDSVTYNELVAAYVRAGYHDDGDAVIDTMTSKGIMPNAITYTTVINAYAKTGKGDKALKLFNQMKELGCVTDRWGPGKMELCLGEPGAAVMLAELAIEVVFGVLSWFQVGIG. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02999 455 MobiDBLite consensus disorder prediction 182 207 - -
Seca8g02999 455 Pfam PPR repeat family 345 393 IPR002885 -
Seca8g02999 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Seca8g02999 455 NCBIfam pentatricopeptide repeat 347 381 IPR002885 -
Seca8g02999 455 NCBIfam pentatricopeptide repeat 382 415 IPR002885 -
Seca8g02999 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Seca8g02999 455 Gene3D Tetratricopeptide repeat domain 331 417 IPR011990 GO:0005515
Seca8g02999 455 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 335 415 - -
Seca8g02999 455 MobiDBLite consensus disorder prediction 165 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02999 Seca-Chr8 83893217 83894584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02999 303 338 Homeobox Transcription Factor Family AT1G52150 80.556 2.15e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02999 K17710 - cave:132190440 133.65