Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02998 ATGAGGTGGGATCTCTTTGAGTGCTGCTTCACTAACTGTTCTTCTGACACAATTCCAATTCCAAAGCGCAGTAAGTTGAAGTGGCGAATCTTCCCCTATAGGCAACTTACAAAAGCCACAAATAATTTTGATGAATGTCATATTCTTGAAAGGAGAGGCTTGGCCATAGTATATTATGGAAAACTTGAGAATGGTCGTGAGATTGCAATCCAGCGCTTTAAGGAAGACAAGCGACACATATTGCAACGGTTCATTGATGAAACTATTATCCTAAATTACATGCCCCACAAAAACCTTGTGTCTATTTACGGGTGTTCCACTCATCACAAGGAATCCCTTCTAGTACATGAATACCTATCCAATGGAACTCTTGCTGCTCATCTTCAAGGCACAATAGCAGAAAGCAGAATATTACCTTGGCTTACCCGATTGAATATTGCCATTGATACTGCAAATGCATTGGACTATCTTCACTATAATGGCATCATACACCGTGATGTAAAGTCCAGCAATATTCTGCTTGATATTAACTCTTGTGCTAAAATTGCTAACTTTCATTTATCATGGAAGCTTCCAGAGGGAGTTTCTGTTGATAACACCCATGTTACAAGTGATATAATAGGAACATGTGGTTATATAGACCCAGATTATGTGTCAAAAGGCTTCCTTAATGTAAAAAATGATGTTTATAGTTTTGGGGTTGTGTTGTGTGAGCTTATGTCATCAAAGCTTGCAGAATATTGGGTTCAGAGTGAAGAGGATAGTCTTGCTACCCTTTTAAGCACAAAAGTTGAAAACCAAGCTTTGTTGGAGCTTTTAGATCCCAGACTTAACTTTCAATCAGAGATTAAGATGACACAGATGATTACTGCTACAGCTGAGCTCGCATCTAGGTGCTTGCAATGTCCACTAGAATTAAGGCCAAGCATGGAACAGGTGCTAGAGACTCTCAATGGCATAAAGCAAGGGAAATATGAAACAAGCCCGATGAAAGTTCTACCTTTTAAGTCAGGATTATTGATGTCTTATTGTAATGCATATATCTCAGCTTTCAAGATCTTCCACCATGCTGAACTTGAAGAAGCTACTAACCATTTTAACACTTGCCTTGGAAAGGGAGGGTTCGGCACGGTCTACTATGGAAAACTTCAAGATGGGCGAGAGGTTGCAATAAAACGTTTCCATGAGGAGACAGACAAAACCATTAGGCAATTCATGAAAGAAATTGAGATCTTATGTCTCTTGCAACATCAAAATCTGGTTTCACTCTATGGTTGCAGTTCTCGTCATAGCATCAAACACATGCTAGTGTACGAGTACATCTCCAATGACACACTTTCTAAGCATCTTCATGAATCTTCTTGTGGTAAACTATCATGGCCTACTAGATTAAATATCACCATTGAAATTGCAACTGCTTTGTTATATCTCCATGACTCAGGGATCATCCACCGTGACATAAAAGGGAGCAACATTCTGTTGGATGAAAATTTTACTGTTAAAGTAGCAGATTTTGGACTCTCACGGTTTCTTCCGGATTATGTTACTCACGTTTCAACTATGCCAGTAGGAACTCGTGCTTACATAGATCCAGACTATTATGAATCTGGAAGGGTCAGTGACAAAAGTGATGTCTATAGCTTTGGGGTGGTCTTGTTTGAGCTCATATCATCCAAACCCCCAAGTTTAATGGAAGGCACAGAGCGCATTACTCTTGCCCAATTTGCAATGAGTAAAATCTTAAACAAGGCATTGGAGGAGCTAGTGGATCCATGTCTTGGGTTTGATTCTGACAAAAATATAATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGCGTGCAGTGCCCCAAGGAACTCAGGCCATCCATGAAACAGGTGTTAGAGACCTTAGAGGGCATAAGGAAAGGGAAATGGGGATTCAATCAGATAACATAG 1944 0.3992 MRWDLFECCFTNCSSDTIPIPKRSKLKWRIFPYRQLTKATNNFDECHILERRGLAIVYYGKLENGREIAIQRFKEDKRHILQRFIDETIILNYMPHKNLVSIYGCSTHHKESLLVHEYLSNGTLAAHLQGTIAESRILPWLTRLNIAIDTANALDYLHYNGIIHRDVKSSNILLDINSCAKIANFHLSWKLPEGVSVDNTHVTSDIIGTCGYIDPDYVSKGFLNVKNDVYSFGVVLCELMSSKLAEYWVQSEEDSLATLLSTKVENQALLELLDPRLNFQSEIKMTQMITATAELASRCLQCPLELRPSMEQVLETLNGIKQGKYETSPMKVLPFKSGLLMSYCNAYISAFKIFHHAELEEATNHFNTCLGKGGFGTVYYGKLQDGREVAIKRFHEETDKTIRQFMKEIEILCLLQHQNLVSLYGCSSRHSIKHMLVYEYISNDTLSKHLHESSCGKLSWPTRLNITIEIATALLYLHDSGIIHRDIKGSNILLDENFTVKVADFGLSRFLPDYVTHVSTMPVGTRAYIDPDYYESGRVSDKSDVYSFGVVLFELISSKPPSLMEGTERITLAQFAMSKILNKALEELVDPCLGFDSDKNIMEMITAVAELAFQCVQCPKELRPSMKQVLETLEGIRKGKWGFNQIT. 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02998 647 CDD STKc_IRAK 370 636 - -
Seca8g02998 647 Gene3D Phosphorylase Kinase; domain 1 20 118 - -
Seca8g02998 647 Gene3D Transferase(Phosphotransferase) domain 1 441 642 - -
Seca8g02998 647 Gene3D Transferase(Phosphotransferase) domain 1 119 332 - -
Seca8g02998 647 Pfam Protein kinase domain 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02998 647 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 351 640 IPR044652 GO:0004672
Seca8g02998 647 Pfam Protein tyrosine and serine/threonine kinase 366 633 IPR001245 GO:0004672|GO:0006468
Seca8g02998 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Seca8g02998 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Seca8g02998 647 ProSiteProfiles Protein kinase domain profile. 364 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02998 647 SMART serkin_6 43 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02998 647 SMART serkin_6 364 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02998 647 SUPERFAMILY Protein kinase-like (PK-like) 346 637 IPR011009 -
Seca8g02998 647 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Seca8g02998 647 ProSiteProfiles Protein kinase domain profile. 43 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02998 647 SUPERFAMILY Protein kinase-like (PK-like) 27 336 IPR011009 -
Seca8g02998 647 FunFam Wall-associated receptor kinase 3 441 646 - -
Seca8g02998 647 Gene3D Phosphorylase Kinase; domain 1 341 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02998 Seca-Chr8 83883857 83886620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02998 353 637 Receptor kinase-like Gene Family AT1G25390 55.326 3.75e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca8g02998 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02998 - - gsj:114418636 977.622