Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02970 ATGTTTGTGGTGATTCACAGGCTTGTGACAAATTTTGATGAGGTCTCTTTTCACTTTATTGATTGCATACATAACCACCTCCGCTCCAAAGTAAAGATGGAAGGAAACACTTCCTTGCATCCTCCTCCTTCAGACTCATCTTTGAACACTCCTGTCAGAAGTGCATCACACGGATCTCAGGCACCATCATCAAATCCTGGATATGCACAATATAGCGTGGATGGACTCAAGGATTGTGATAAATTGGTTATTGACTATCTGAAGCAGCATTCAGACATGTCAGATGAACGGGGAATACATGTTAATGAACTATCTCGAGAACTCAAGCTTCCATTGGACAAGATCATGTTGTCACTGAAGACTCTTGGAGATGATGGTTTGGTATACTCCACCATAGATGATTTCCATTACAAACAAGCTTGA 423 0.4113 MFVVIHRLVTNFDEVSFHFIDCIHNHLRSKVKMEGNTSLHPPPSDSSLNTPVRSASHGSQAPSSNPGYAQYSVDGLKDCDKLVIDYLKQHSDMSDERGIHVNELSRELKLPLDKIMLSLKTLGDDGLVYSTIDDFHYKQA. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02970 140 Pfam Replication protein A C terminal 52 134 IPR014892 -
Seca8g02970 140 MobiDBLite consensus disorder prediction 39 69 - -
Seca8g02970 140 FunFam Replication protein A 32 kDa subunit 71 140 - -
Seca8g02970 140 Gene3D - 70 140 IPR036388 -
Seca8g02970 140 PANTHER REPLICATION PROTEIN A-RELATED 7 138 IPR040260 -
Seca8g02970 140 MobiDBLite consensus disorder prediction 34 69 - -
Seca8g02970 140 SUPERFAMILY "Winged helix" DNA-binding domain 74 138 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02970 Seca-Chr8 82613882 82615182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02970 1 138 Core DNA Replication Machinery Family AT2G24490 34.266 2.15e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02970 K10739 - gmx:100802512 203.371