Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02963 ATGCTCTATAGCTGTGGCCTTTGTGGCAAGGATTATAAAAGTTCTAAAGCTCATGCTGAGCATCTTAAATCACGTGGTCATTTGATGCGAGTTTCTGAAGGAACTAGTCAGTCAGATGAGAAGGCAATAATTAAGCCGCTTCCGCAACGTGTTGTGAATAGGCCTCCTCCTAAAAGAGAGGTAGATAACTCTGAAAATGAAGAAAGTGAAGATGAATGGGAAGAGGTTGATCCGGAAGATGATTTGGTTGATAATGCTGCAAAGTCCTTGACTGATTTGAATGTGTCTGAGCATGCTGATAATGTTGATATGGATGAAGATGGTGATGATGATGCTTTTGAGGAGTTAGATCCAACGAGTTGCTTTATGTGCGATCAAGAGCACAATACAATAGAGAACTGCATGGTTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTAGAGTATTTGAAGGATCCAAAACGCCTCCTCACTTATCTTGGCCTTAAGGTTAAAAGGGACTACATGTGTCTGTACTGCAATGATCGATGTTATCCTTTCAGCAGCCTGGAAGCGGTCAGGAAACATATGGCAGCAAAAGGTCACTGTAAAGTGCATTATGGTGATGGTGATGATGATGAGGAAGTAGAGTTAGAAGAGTTCTACGATTATAGCAGCAGTTATCTGGATGATCAAGGCAAGCAGCTGGTTGTATCTGGTGATTCTAATAACAATATAGAACTTGGTGGTGGGTCTGAGCTCATAATCACTAGGAAATCTGGTGATAGAATATCAACCAGAACACTAGGTTCCCGTGTATTTCTGCGTTATTATCGTCAGAAACCTCGACCATCACCTTTGAATAATATGGCCATCACTGCTGCATTGGCTTCAAGGTACAAGAGCATGGGTTTGGCAACCGTCCAATCAAGGGAGCAAATTGTGAGAATGAAAGTCCTGAAGGAAATGAACAAGTCAGGTGTGGATTATATGCGTACCAAGATAGCGATGAAGAGTAATGTTATCCGAAACCTGCCAAAGAATGTTCCATATTAG 1041 0.4179 MLYSCGLCGKDYKSSKAHAEHLKSRGHLMRVSEGTSQSDEKAIIKPLPQRVVNRPPPKREVDNSENEESEDEWEEVDPEDDLVDNAAKSLTDLNVSEHADNVDMDEDGDDDAFEELDPTSCFMCDQEHNTIENCMVHMHKHHGFFIPDVEYLKDPKRLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMAAKGHCKVHYGDGDDDEEVELEEFYDYSSSYLDDQGKQLVVSGDSNNNIELGGGSELIITRKSGDRISTRTLGSRVFLRYYRQKPRPSPLNNMAITAALASRYKSMGLATVQSREQIVRMKVLKEMNKSGVDYMRTKIAMKSNVIRNLPKNVPY. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02963 346 MobiDBLite consensus disorder prediction 65 80 - -
Seca8g02963 346 ProSitePatterns Zinc finger C2H2 type domain signature. 5 27 IPR013087 -
Seca8g02963 346 SUPERFAMILY beta-beta-alpha zinc fingers 105 180 IPR036236 -
Seca8g02963 346 SMART c2h2final6 3 27 IPR013087 -
Seca8g02963 346 SMART c2h2final6 119 141 IPR013087 -
Seca8g02963 346 SMART c2h2final6 170 197 IPR013087 -
Seca8g02963 346 PANTHER ZINC FINGER PROTEIN 622 1 345 IPR040025 -
Seca8g02963 346 MobiDBLite consensus disorder prediction 16 80 - -
Seca8g02963 346 Pfam C2H2 type zinc-finger (2 copies) 121 222 IPR041661 -
Seca8g02963 346 SUPERFAMILY beta-beta-alpha zinc fingers 3 33 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02963 Seca-Chr8 82445246 82452154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02963 1 346 C2H2 Transcription Factor Family AT4G31420 62.857 1.04e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g02963 zf-C2H2_2 5.9e-26 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02963 K14816 - gmx:100796317 558.91