Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02962 ATGAAAGACCAAGAAGCGGATTTGGAAGCTGATCTTCCTCCACCTTCTGATATGGAACTTACCTCTTCCACCACCCACATGGACACTGACATGGATCTCTTCTTGGAAGAGAGCAAGTCCCTTCACAAGCCCGAAGCGTTGAAATCACTGAGGAGCATAATCATTGCAGACATTGGCACTGCTCTGAAGAAGGCAAGGGTCATAAGGACCCAACTTGAAGAGATGGATCGTGCTATTGTAGCAAATAGGAGGCTCTCTGGTCTCAAAGATGGAACCCTAGCAATTTACAGAACCAGATTTGCAGTCACCAATGGGCTGAGAAAGAATCTGAAAGAGCTAATGATGGAGTTTCACGGTTTGAGGCAGAGGATGATGAATGAAGGGATTTTGGGAAAGGTCATAAAGGAACATGGAAGGGGGAAGGTTCTAGAAAATGTGGTGGAGATACAAGATAGGCATGATGCCGCTAAAGAGTTTAAGAAAAGCTTGTTGGAGCTGCATCAGGTGTTTATGGACATGGTTGTGATGGTAGAAGCACAGGGTGAGAAAATGGATGACATTGAGCACCATGTGCTTCATGCTTCTCACTATGTCAAAGACAAAATCAAGAACCTTCAGACTGCAAAGAAATACCAAAGGAGCAGCAGGAAGTGGATGTGCATTGGGATCATACTTTTCTTGATTTTGATTCTTGTCATTGTCATCCTCATTGCCACCAGTTTCAGGAGTTCTTAA 735 0.4408 MKDQEADLEADLPPPSDMELTSSTTHMDTDMDLFLEESKSLHKPEALKSLRSIIIADIGTALKKARVIRTQLEEMDRAIVANRRLSGLKDGTLAIYRTRFAVTNGLRKNLKELMMEFHGLRQRMMNEGILGKVIKEHGRGKVLENVVEIQDRHDAAKEFKKSLLELHQVFMDMVVMVEAQGEKMDDIEHHVLHASHYVKDKIKNLQTAKKYQRSSRKWMCIGIILFLILILVIVILIATSFRSS. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02962 244 Gene3D - 24 128 - -
Seca8g02962 244 Gene3D - 142 241 - -
Seca8g02962 244 PANTHER SYNTAXIN 42 229 IPR045242 -
Seca8g02962 244 SMART SynN_4 7 129 IPR006011 GO:0016020
Seca8g02962 244 Pfam Syntaxin 36 127 IPR006011 GO:0016020
Seca8g02962 244 Pfam Syntaxin 128 181 IPR006011 GO:0016020
Seca8g02962 244 CDD SNARE_syntaxin1-like 146 207 - -
Seca8g02962 244 Pfam SNARE domain 183 234 IPR000727 -
Seca8g02962 244 SUPERFAMILY t-snare proteins 39 199 IPR010989 GO:0016020|GO:0016192
Seca8g02962 244 FunFam Syntaxin 132 139 239 - -
Seca8g02962 244 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 146 208 IPR000727 -
Seca8g02962 244 SMART tSNARE_6 141 208 IPR000727 -
Seca8g02962 244 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02962 Seca-Chr8 82442504 82443398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02962 1 244 SNARE and Associated Proteins AT1G08560 48.344 6.71e-76 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02962 K08486 - gmx:100816016 310.457