Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02916 ATGGCTCATAAAAGAGCATACTATTGCATTCTCATGCTTTTTATGTTGGCCATTAGTTTTGTGCCAACCAGTGGTGACACAACTGGTCAAATTTTGATGAGGTTTAGAAGCTTTTTGTCCAATGACAATGCTTTAAATAACTGGGGTGATGAGTCTAATTTGTGCAACTGGGCTGGTTTATTATGCACCAAGCAGGTATTTTATGGGTTGAGACTAGAGAATATGGGACTAGGTGGGAAGGTTGATGTAGACACCTTGTTGGAATTGTCAAATTTGGTCAGTTTTAGTGTCATTAACAACACATTTGAGGGTCCAATGCCTGAATTCAAAAAGCTTGTGAAGTTAAGGGCATTGTTTCTGTCCAATAACAATTTCTCTGGTGAAATTCCGGATGATGCTTTTGAGGGCATGAAAAGGCTTAAAAGGGTATTCTTGGCAGAAAATAGGTTCACGGGTCATATACCTAAGTCCCTTGCTAACTTGCCTAGACTTTTGGATTTGAACTTGCATAAGAATAGTTTTGGAGGCAACATACCGGAATTTCAGCAAAAGGATTTCAGGGTATTTAATTTATCAAACAACCAATTGGAGGGTCCAATACCAGAAAGCTTAAGCAACATGGATCCAAGCTCATTTGCTGGTAACAAAGGCTTATGTGGAAAACCTGTAAGCGGCCCCTGCAACAACAACACCACAAAATCTCAGGTGCTTCCCATCCCCACTTCTCCACCTGAAGGAAAGGGAAAGAAGCACCACATCCTTATAATTGTTATTGTTGTGGTGTCTGTGGTTGTCTTGGCTTCAATAGCAGCACTTCTGTTTATCCATAACCGCCAGAGACGAAGCTTGCAACCTTTAATAGGCCAGCAGGTGAATTCCCATGACAGTAAAGGTTTCAGGGAGGCACAATCCATTGATGTGATAGGTGATTTCAAGAAGGGTGAGAATGGTGATTTGAACTTTGTTAGGGAAGACAGAGGGGGTTTTGATTTGCAAGACTTGCTTAGGGCCTCAGCTGAGGTTCTTGGCAGTGGAAGTTTTGGGTCCACTTACAAGGCTATGGTTTTGAATGGACCAGCTGCTGTGGTTGTGAAGAGATTTAGGCACATGAACAGAGTTGGGAAACAAGAGTTCTATGAGCATATGAGGAAGCTTGGAAGTTTGACACATCCTAATCTACTCCCTCTTGTTGCATTCTACTACAGGAAAGAAGAGAAGTTTTTGGTTTATGACTTTGGTGAAAATGGCAGCTTAGCCAGTCATCTACATGGTATGCCAGGTAGAAATGGTACTGTGCTAAACTGGTCAACTCGTTTGAAAATCATAAAAGGAGTAGCCAGGGGCTTAGCATACCTCTACAGAGAGTTCCCTGGACAAAACCTACCTCATGGCCATCTTAAATCCTCCAATGTGGTATTAGACCATTCATTTGAGCCACGTTTAACAGAGTATGGACTTGTGCCAGTGATGAACAAGAGCCATGCTCAGCAGTTCATGGCAGGCTACAAGTCCCCAGAGGTGAGCCAGTTTGACAGACCCAATGAGAAGACAGATGTTTGGTGTTTGGGGATCCTCATACTGGAATTGTTGACAGGGAGGTTCCCAGCAAACTATCTAAGACATGGGAAGGGTGAAAATGCAGATTTGGCAACATGGGTTAACTCAGTTGTGAGGGAAGAGTGGACTGGTGAGGTGTTTGATAAAGATATATTGGGTACAAGGAATGGAGAGGGTGAGATGCTGAAGCTGTTGAGGATTGGGATGTATTGCTGTGAATGGAGTGTGGAGAGTAGGTGGGATTGGAGAGAGGCAGTGGCAAAGATTGAGGAGTTGAAGGAGAAAGATAGTGAAGATGAATTCTCTTATGTTAGTGATGGAGATTTATACTCAAGGACTATGACTGATGATGACTTCTCTTTGTCTGTCAGTGACTCAAGGGTTGGCCAATGA 1950 0.4287 MAHKRAYYCILMLFMLAISFVPTSGDTTGQILMRFRSFLSNDNALNNWGDESNLCNWAGLLCTKQVFYGLRLENMGLGGKVDVDTLLELSNLVSFSVINNTFEGPMPEFKKLVKLRALFLSNNNFSGEIPDDAFEGMKRLKRVFLAENRFTGHIPKSLANLPRLLDLNLHKNSFGGNIPEFQQKDFRVFNLSNNQLEGPIPESLSNMDPSSFAGNKGLCGKPVSGPCNNNTTKSQVLPIPTSPPEGKGKKHHILIIVIVVVSVVVLASIAALLFIHNRQRRSLQPLIGQQVNSHDSKGFREAQSIDVIGDFKKGENGDLNFVREDRGGFDLQDLLRASAEVLGSGSFGSTYKAMVLNGPAAVVVKRFRHMNRVGKQEFYEHMRKLGSLTHPNLLPLVAFYYRKEEKFLVYDFGENGSLASHLHGMPGRNGTVLNWSTRLKIIKGVARGLAYLYREFPGQNLPHGHLKSSNVVLDHSFEPRLTEYGLVPVMNKSHAQQFMAGYKSPEVSQFDRPNEKTDVWCLGILILELLTGRFPANYLRHGKGENADLATWVNSVVREEWTGEVFDKDILGTRNGEGEMLKLLRIGMYCCEWSVESRWDWREAVAKIEELKEKDSEDEFSYVSDGDLYSRTMTDDDFSLSVSDSRVGQ. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02916 649 SUPERFAMILY Protein kinase-like (PK-like) 340 612 IPR011009 -
Seca8g02916 649 Pfam Leucine rich repeat N-terminal domain 29 62 IPR013210 -
Seca8g02916 649 Gene3D Transferase(Phosphotransferase) domain 1 414 631 - -
Seca8g02916 649 Pfam Protein kinase domain 339 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02916 649 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 83 178 - -
Seca8g02916 649 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Seca8g02916 649 SUPERFAMILY L domain-like 48 211 - -
Seca8g02916 649 ProSitePatterns Protein kinases ATP-binding region signature. 342 375 IPR017441 GO:0005524
Seca8g02916 649 FunFam Pollen receptor-like kinase 1 414 622 - -
Seca8g02916 649 Gene3D Ribonuclease Inhibitor 185 226 IPR032675 -
Seca8g02916 649 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Seca8g02916 649 Gene3D Phosphorylase Kinase; domain 1 307 412 - -
Seca8g02916 649 ProSiteProfiles Protein kinase domain profile. 336 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02916 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 617 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02916 Seca-Chr8 80998565 81002445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02916 8 640 Receptor kinase-like Gene Family AT4G31250 45.547 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca8g02916 Pkinase 3.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02916 - - tpra:123893577 979.548