Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02895 ATGGGCATTGTTACTGCTATTTCGGAGGAGTTGAACTTAAGCAATGAGGGGAGGCAGACACGGTTCATGTTGCTTGATTTAGTGGATGAGATGGGACAAATTCGACTCGCTCTCTTTGGGGAAATGATTGATGTGGTTGCTGGATTCCTATCTCTCCCTCGATGTGGGCTCCCTGTACTCATAATACAATTGGCGAAGGTCAATCTGTACAAGGGTGAAGTTGGAATCCAAAATGTTTTCAATGCCTCCAAACTCTACTGGAACCCAGACATTGCTGAGGCTATTGAGTTTAAGAATGGATTAGCTGTCCATGAAATTGAAACTGATGTTGAGATTCGAACCATCTCTGATAGGAGCAGGCCTGTGTCAATGAAAGACGAGTTCCTCAAACTATATCCCAAAAAGACTGTGGCACAGCTTCAGGAGATGGATGAGGATGGGTTCTTTATCATTCTAGCCTCAATTGATCAAGTTATCCATGATGGATTTTGGTGGTACATGGCTTGTCCTTGCATGAAATCGGTTTCATATGATGATGGGGTTCCATTTTGTGAGGATTGTGATACTTATGTGTTTGATCTTACGCCAAGGTTTAGGCTAAAATTGGAAGTTTCTGATGGTTCAAAAAATGCCCAACTGATTTTATTCGACTCTGAATGCTGTGCATTGCTCAACAAGTCTTGTCGTGACATGTTGGCTGATCTTAAGGCAGTGAAATCTTCTGCTCATCCATCACGCATCTCTAACTTGGTTGGGACTGAGTTGCTTTTTCGAGTTGAGCGAAAGGATGATCCAACATTCACCTATGAGGAGTGCTTCCGAGTGAAGAGGGTGTGCCTTGATCCTGAAATTATCGCAGACTACAAAAGTGAATTGGATGATCAGACTCCAGTGCAGCTGAATTTTGCCCCACCGTTTACTAAGATTGGGGGTGGAGAGTGA 942 0.4342 MGIVTAISEELNLSNEGRQTRFMLLDLVDEMGQIRLALFGEMIDVVAGFLSLPRCGLPVLIIQLAKVNLYKGEVGIQNVFNASKLYWNPDIAEAIEFKNGLAVHEIETDVEIRTISDRSRPVSMKDEFLKLYPKKTVAQLQEMDEDGFFIILASIDQVIHDGFWWYMACPCMKSVSYDDGVPFCEDCDTYVFDLTPRFRLKLEVSDGSKNAQLILFDSECCALLNKSCRDMLADLKAVKSSAHPSRISNLVGTELLFRVERKDDPTFTYEECFRVKRVCLDPEIIADYKSELDDQTPVQLNFAPPFTKIGGGE. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02895 313 Pfam Replication factor-A C terminal domain 148 276 IPR013955 -
Seca8g02895 313 Gene3D - 1 109 IPR012340 -
Seca8g02895 313 CDD RPA1_DBD_B_like 1 98 - -
Seca8g02895 313 SUPERFAMILY Nucleic acid-binding proteins 132 283 IPR012340 -
Seca8g02895 313 SUPERFAMILY Nucleic acid-binding proteins 1 103 IPR012340 -
Seca8g02895 313 CDD RPA1_DBD_C 137 295 IPR047192 -
Seca8g02895 313 Gene3D - 125 290 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02895 Seca-Chr8 80311931 80314182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02895 1 231 Core DNA Replication Machinery Family AT4G19130 24.603 3.70e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02895 - - lja:Lj3g3v3527180.1 257.299