Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02886 ATGGAACCTAAGTGGGGCGGCGTTCTGGCGGCGTCGTCGATTTTCTCCGCCTTCGACGACCTGAAGTGGATCGCAACGGAGTTCGATCAAGAACTTTTCACGAAGCGGCCGGTGGCCGGATCAACCAACGACGACGACAACGACGTGAAACCGTGCAAGGTGGATCCATTCACCGGCGGCGGCGTTTTCTCCGGTCAAATCAACGGCGCCGCCACCGCCGCTTCTTTCAAAAATCTGGATGCGGTAACTGCATTTTCAACATGTGGTGGACTAACAGATAATACACTTATCTCCCCAAACCTCACTTCCAAGCATTCAACCATCTCTGCAATTGATTCTCAATCATCCATTTGTGGTACTGTAACCAGCCCGGTGTCTGCTAATAAATCAAACAGCAGAGATGATCAAACAAAAGGAGTCGTTACAAGCGGTTCCTCGCGTGATCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACTAACCCTATTGACGTGAAGCGCCTTAGAAGGAAGGTTTCTAATCGCGAGTCTGCCAGGAGGTCCAGAAGAAGAAAACAAGCACATTTGGCTGACCTGGAGGTGCAGGTTGAACAGCTGAGGTTGGAAAATGCAACCCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAGGCTGACACGAATAACCGAGTCCTAAAATCAGATGTAGAAGCTCTGAGAGCTAAGGTATTAGTCATTCTTCGTATAATAGGATCATGTCAGACAGGGTTAAACTTATAA 774 0.4832 MEPKWGGVLAASSIFSAFDDLKWIATEFDQELFTKRPVAGSTNDDDNDVKPCKVDPFTGGGVFSGQINGAATAASFKNLDAVTAFSTCGGLTDNTLISPNLTSKHSTISAIDSQSSICGTVTSPVSANKSNSRDDQTKGVVTSGSSRDPSDEDDEAGPCEQSTNPIDVKRLRRKVSNRESARRSRRRKQAHLADLEVQVEQLRLENATLFKQLTDASQQFREADTNNRVLKSDVEALRAKVLVILRIIGSCQTGLNL. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02886 257 Coils Coil 178 219 - -
Seca8g02886 257 Pfam bZIP transcription factor 168 216 IPR004827 GO:0003700|GO:0006355
Seca8g02886 257 SUPERFAMILY Leucine zipper domain 169 219 IPR046347 GO:0003700|GO:0006355
Seca8g02886 257 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 172 187 IPR004827 GO:0003700|GO:0006355
Seca8g02886 257 SMART brlzneu 165 229 IPR004827 GO:0003700|GO:0006355
Seca8g02886 257 MobiDBLite consensus disorder prediction 122 166 - -
Seca8g02886 257 CDD bZIP_plant_GBF1 170 221 IPR045314 GO:0003700|GO:0006355
Seca8g02886 257 Gene3D - 168 225 - -
Seca8g02886 257 PANTHER BASIC LEUCINE ZIPPER 63 88 242 - -
Seca8g02886 257 FunFam BZIP transcription factor 167 218 - -
Seca8g02886 257 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 167 230 IPR004827 GO:0003700|GO:0006355
Seca8g02886 257 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02886 Seca-Chr8 79639489 79642700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02886 112 256 bZIP Transcription Factor Family AT5G24800 55.844 5.26e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca8g02886 bZIP_1 5.8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02886 K25784 - gmx:100776831 267.314