Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02881 ATGCAAAAGGTCAAGGAAGCTGCAGCTAGCAAAGAGGGGAAAGATATGGAAATGGAAGGGAGTACTCGTGATGCAACAAAGGAGGAAACCCTACCACCAGGGTTTCGATTTCATCCTACCGATGAAGAACTTATCTCTTACTATCTCATAAACAAGATTTCAGATTCTACTTTTACTGGCAAAGCAATAGCTGATGTGGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGAAAGGCAAAGATGGGGCAAAAGGAATGGTACTTTTTCAGTCTAAGAGATAGAAAATACCCTACGGGTGTGAGAACCAATCGAGCAACAAACACTGGGTATTGGAAAACCACAGGGAAAGACAAAGAGATATTCAACAGTGTTACTTCAGAGTTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGAAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCACGAATACCGCATTCATTCAAAATCAAGCTTCAGAACCAACAAGCAGGATGAATGGGTGGTATGCCGGGTATTCCGCAAGAGTGCTGCTGGTGCAAAGAAGTACCCTTCTTCCAACCCAACCAGAGGAGCAGTGAATCCTTATAGTTTGGAAGTTGGTACAAGCATTGTTCCACCACCAATGATGCAACTAGGAGATCCTGCTGCTGCTCATTTCCTTTATGGAAGGAATTACATGAGCAATGCAGAGCTAGCTGAAGTTACTAGGGTCCTGAGAGGATCAACCAGTAGTAGTACTATCAACCTACCACCAATGCAGCCCCATTTCAACTACCCACCACCCCCACCTGGAGGAGGAGGATTCACCATTTCAGGGCTTAACTTGAACCTTGGAGGAGGAGGAGCAGCAGAAGCCACAAGTACACAACCAATTTTGATGCCACCCCCACAGCCACACACTATGGATTTCAGTTCCACCAATAATGGATTTCAGTATAATGGTGCAGAAATGAGCAATAATGCAAATCCTCATGCCAATAGCAGGTACATGGGTGGTATGGACCATTGCGTGGATCTTGACAATTACTGGCCTTCCTACTAA 1059 0.4523 MQKVKEAAASKEGKDMEMEGSTRDATKEETLPPGFRFHPTDEELISYYLINKISDSTFTGKAIADVDLNKCEPWELPGKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSFRTNKQDEWVVCRVFRKSAAGAKKYPSSNPTRGAVNPYSLEVGTSIVPPPMMQLGDPAAAHFLYGRNYMSNAELAEVTRVLRGSTSSSTINLPPMQPHFNYPPPPPGGGGFTISGLNLNLGGGGAAEATSTQPILMPPPQPHTMDFSSTNNGFQYNGAEMSNNANPHANSRYMGGMDHCVDLDNYWPSY. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02881 352 SUPERFAMILY NAC domain 26 180 IPR036093 GO:0003677|GO:0006355
Seca8g02881 352 Gene3D NAC domain 40 184 IPR036093 GO:0003677|GO:0006355
Seca8g02881 352 ProSiteProfiles NAC domain profile. 31 180 IPR003441 GO:0003677|GO:0006355
Seca8g02881 352 FunFam NAC domain-containing protein 100-like 40 184 - -
Seca8g02881 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 28 245 - -
Seca8g02881 352 MobiDBLite consensus disorder prediction 1 35 - -
Seca8g02881 352 Pfam No apical meristem (NAM) protein 32 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02881 Seca-Chr8 79463568 79466531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02881 16 352 NAC Transcription Factor Family AT2G24430 55.028 7.41e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g02881 NAM 1.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02881 - - lja:Lj1g3v2035130.1 488.419