Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02871 ATGTCTTGCCACATATTTCCAGCGACACGTCCTACATTAGGCATGTTTGAATCAAAATTTTATGCTTTCAAGGGCAAAATCGACATAGATCAAAAGTTTTGGTCAAAATGGTGTTCCCACTTACCCTCTGAGGTCTATTTTACAGATCTTGTTGGGAACTCTTTCCCAATAGGTATTAGTTCAAAAGGAGATAGTGCTGTCTTTGAAAGAAATGTGAACACAATGGTTAGATTTTATGGGCTGAATAGAAAGCATAGTGGTCTATTTTGCTATAAGGGTGGGAACCAATTCTATATAAGGGTGGGAAATCGTTACGGGGTTGAAATTAAATATCCCCAAAAGCCAAGTGAGGTAGTGGAAATATCTTCAGATGATAGTGAAAGTGACCATGAAGGTCATGTCGATTCTGTTGATGATGGCAGTGATCCTGAGGATTTCCCTTTCTGGATTATGACAATGTCCAAGTCATCTGCTTCAGGGAGGAATGCTTTGCCTATTCCTGCAAAATTTGTCAAAGAGGGGCTTCTGCAAAGTCAGCGGGATTTGACTTTAAGACTTGACAACGGTGAACAGATTCTTTGCAAAATAATTAAAGGTTCTAGGAGGCGGAATGAACGATATCTTGGTAGTGGTTGGTACAAGTTTTGCCGCGACAAAAAATTCAAGGAGGGAGATATGTTGTTGTTTTATTCAAAAGGCAATCCTTACAATTTGTGTGTTAAGATAAAGCGCTCCTAA 738 0.393 MSCHIFPATRPTLGMFESKFYAFKGKIDIDQKFWSKWCSHLPSEVYFTDLVGNSFPIGISSKGDSAVFERNVNTMVRFYGLNRKHSGLFCYKGGNQFYIRVGNRYGVEIKYPQKPSEVVEISSDDSESDHEGHVDSVDDGSDPEDFPFWIMTMSKSSASGRNALPIPAKFVKEGLLQSQRDLTLRLDNGEQILCKIIKGSRRRNERYLGSGWYKFCRDKKFKEGDMLLFYSKGNPYNLCVKIKRS. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02871 245 PANTHER B3 DOMAIN-CONTAINING 148 242 - -
Seca8g02871 245 SUPERFAMILY DNA-binding pseudobarrel domain 145 239 IPR015300 -
Seca8g02871 245 MobiDBLite consensus disorder prediction 120 140 - -
Seca8g02871 245 ProSiteProfiles B3 DNA-binding domain profile. 149 245 IPR003340 GO:0003677
Seca8g02871 245 MobiDBLite consensus disorder prediction 120 142 - -
Seca8g02871 245 SMART B3_2 150 245 IPR003340 GO:0003677
Seca8g02871 245 CDD B3_DNA 152 244 IPR003340 GO:0003677
Seca8g02871 245 Gene3D - 136 245 IPR015300 -
Seca8g02871 245 Pfam B3 DNA binding domain 151 244 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02871 Seca-Chr8 79237326 79238255 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g02871 B3 4.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02871 - K04531 lja:Lj0g3v0086279.1 70.8626