Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02839 ATGCTGAATAAGAGGTTCATCATTTTGAGGTCCCTTGTACCCTTGGTGACCAAAATGGACAAGGCTTCCATACTAAGGGACACCATAGAGTATGTTAAACAGCTTTGA 108 0.4167 MLNKRFIILRSLVPLVTKMDKASILRDTIEYVKQL. 36
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02839 35 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 35 IPR011598 GO:0046983
Seca8g02839 35 Gene3D - 1 35 IPR036638 GO:0046983
Seca8g02839 35 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 35 IPR036638 GO:0046983
Seca8g02839 35 Pfam Helix-loop-helix DNA-binding domain 2 35 IPR011598 GO:0046983
Seca8g02839 35 PANTHER TRANSCRIPTION FACTOR TT8 2 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02839 Seca-Chr8 77800250 77800357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02839 2 35 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 70.588 1.89e-10 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g02839 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02839 - - csin:114287727 61.2326