Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02832 ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGGATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACTGGTACAGTATTTCAAGTAGGCGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTGGAATTTGAAGAGGGTACTATAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTAAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCTATTGATGGTCGGGGAGAAATTTCATCTTCGGAATCTCGTTTAATCGAATCTCCGGCTCCCGGTATTATTTCAAGACGTTCTGTATATGAGCCTCTTCAAACAGGACTTATTGTTATTGATTCAATGATCCCTATAGGGCGCGGCCAGCGAGAATTAATTATTGGGGATAGACAAATAGGTAAAACCGCAGTAGCCACAGATACGATTCTCAATCAACAAGGACAAAATGTAATATGTGTTTATGTAGCTGTTGGTCAAAAAGCATCTTCTGTAGCTCAAGTGGTGACTACGTTACAAGAAAGAGGAGCAATGGAATACACTATTATAGTAGCTGAAACAGCGGATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGCCACACTTTAATCATTTATGACGATCTCTCTAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCGCCGGGTCGCGAAGCTTATCCGGGAGATGTTTTTTATTTGCATTCGCGTCTTTTGGAAAGAGCCGCCAAATCAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACTCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACTGATGGCCAAATATTTTTATAA 1038 0.3931 MVTIRADEISKIIRERIEQYNTEVKIVNTGTVFQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSKAYLGRVINALAKPIDGRGEISSSESRLIESPAPGIISRRSVYEPLQTGLIVIDSMIPIGRGQRELIIGDRQIGKTAVATDTILNQQGQNVICVYVAVGQKASSVAQVVTTLQERGAMEYTIIVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02832 345 FunFam ATP synthase subunit alpha 95 345 - -
Seca8g02832 345 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Seca8g02832 345 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Seca8g02832 345 CDD F1-ATPase_alpha_CD 95 345 IPR033732 GO:0032559
Seca8g02832 345 Gene3D - 3 94 IPR023366 -
Seca8g02832 345 Gene3D - 95 345 IPR027417 -
Seca8g02832 345 NCBIfam F0F1 ATP synthase subunit alpha 4 345 IPR005294 GO:0015986|GO:0045261|GO:0046933
Seca8g02832 345 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 2 345 IPR005294 GO:0015986|GO:0045261|GO:0046933
Seca8g02832 345 FunFam ATP synthase subunit alpha 1 94 - -
Seca8g02832 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 345 IPR027417 -
Seca8g02832 345 CDD ATP-synt_F1_alpha_N 28 94 - -
Seca8g02832 345 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 345 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02832 Seca-Chr8 77592112 77593149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02832 87 345 Primary Pumps ATPases(2) AT4G38510 28.986 1.72e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02832 K02111 - gmx:3989298 632.484