Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02816 ATGTCACCCTCTTCTTCCTTACTAAAGCTCAAGCATAAGCCTCAATTCAGAGATGCGCTGAAACACTTCCTTTTGTGTTCTGCGGGGCCTTTTCCTTCCTTATGTCTTGTTGCGGGACGCAGCTCCAAGGCTAGGGTTTTCACTGCCTTAGCAGCGGTGGTGGAGCAAGAACACGTGGAGCGAGAAAATGATGAAGAGGAAGAGCAATTTAAGCAGACAAGAGCTACCGAAGTGTATGTGTGCAACCTTCCAAGAAGCTGTGACACAGAGCAACTACTTCACATGTTCAAGCCTCACGGATCCATTCTATCTATAGAGGTTTTCCGGAATCCGGAGACTGGTGAAAGTAAAGGGAGTGCTTATGTCACATTAGGATCTATTAACTCGACAAAAAATGCAATTGTTATTAGATGGAATGGTTGGAACTTGCGTTGA 435 0.4529 MSPSSSLLKLKHKPQFRDALKHFLLCSAGPFPSLCLVAGRSSKARVFTALAAVVEQEHVERENDEEEEQFKQTRATEVYVCNLPRSCDTEQLLHMFKPHGSILSIEVFRNPETGESKGSAYVTLGSINSTKNAIVIRWNGWNLR. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02816 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 144 IPR000504 GO:0003723
Seca8g02816 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 134 IPR000504 GO:0003723
Seca8g02816 144 PANTHER OS02G0815200 PROTEIN 18 134 - -
Seca8g02816 144 SMART rrm1_1 77 144 IPR000504 GO:0003723
Seca8g02816 144 SUPERFAMILY RNA-binding domain, RBD 73 135 IPR035979 GO:0003676
Seca8g02816 144 Gene3D - 40 143 IPR012677 -
Seca8g02816 144 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02816 Seca-Chr8 77128940 77130380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02816 56 134 Eukaryotic Initiation Factors Gene Family AT1G49760 32.184 3.51e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02816 - - gsj:114400287 117.857