Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02814 ATGTTCTTAGGTTTGGACCTTCTCAACAGATTTTTGATTCATTTCGCTTTTGTTTGTCGAGTTAGGGCTAATCAATCTCATTTTCGACATATTTCGTCTTCCTTTTCATTGCAAATCACTCGAGGTTTCCAATCGTACTTGAAGAGAAGCAATCTCATCCTTTCTCTTCTCGGACAAGTTTCCATGATTCAAGATCTCGCCATGCTCCCTTTGTCTCTTAATTCGCAGGTGATGCTTATCGAGGTGTTCTCAAATGATCTTTTAGCATCAAATTTGATCATTCCAATGGCGGAGAAGGTGCTGAAGCTACTTGAAATGGTGCTTGGAAGCCAAGAGAAGTCAGAGGAAGTTCAACAAGATAATCAAATAGTAGACACTGCAATATTCCTAGGCTGCAAATTCTTAGGAGAACGGTGCACACTCTATGATCATGTGGGTAGGCATTATTACAAGGATTGTTATATTGAAGGCTCTGTTGATTTCATTATTACATGA 495 0.3919 MFLGLDLLNRFLIHFAFVCRVRANQSHFRHISSSFSLQITRGFQSYLKRSNLILSLLGQVSMIQDLAMLPLSLNSQVMLIEVFSNDLLASNLIIPMAEKVLKLLEMVLGSQEKSEEVQQDNQIVDTAIFLGCKFLGERCTLYDHVGRHYYKDCYIEGSVDFIIT. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02814 164 Gene3D - 73 164 IPR012334 -
Seca8g02814 164 Pfam Pectinesterase 124 163 IPR000070 GO:0030599|GO:0042545
Seca8g02814 164 SUPERFAMILY Pectin lyase-like 125 163 IPR011050 -
Seca8g02814 164 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 82 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02814 Seca-Chr8 77065794 77073916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02814 80 162 Carbohydrate Esterase AT1G05310 36.145 4.13e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02814 K01051 - gmx:100802832 78.9517