Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02800 ATGAACTTACCTGTCCAATCCAAATGTAAACAGGAAGATGAAGTAATTATTGAATTGGTGAACAAATATGGGCCTAAAAAATGGTCAACTATTGCACAACATTTACCTGGACGAATTGGTAAGCAATGTCGAGAAAGGTATGGTTATTGGATTTTTTTACTAATTCTTTCATGGCTTATTTGA 183 0.3333 MNLPVQSKCKQEDEVIIELVNKYGPKKWSTIAQHLPGRIGKQCRERYGYWIFLLILSWLI. 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02800 60 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 10 47 - -
Seca8g02800 60 CDD SANT 10 51 IPR001005 -
Seca8g02800 60 SMART sant 10 53 IPR001005 -
Seca8g02800 60 FunFam Transcriptional activator Myb isoform A 8 51 - -
Seca8g02800 60 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 46 IPR017930 -
Seca8g02800 60 Gene3D - 9 51 - -
Seca8g02800 60 SUPERFAMILY Homeodomain-like 10 49 IPR009057 -
Seca8g02800 60 ProSiteProfiles Myb-like domain profile. 10 51 IPR001005 -
Seca8g02800 60 Pfam Myb-like DNA-binding domain 10 47 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02800 Seca-Chr8 76931645 76931827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02800 10 47 MYB Transcription Factor Family AT4G32730 81.579 4.39e-19 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02800 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02800 - K09420 sspl:121750838 80.4925