Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02777 ATGGCTTCAGTTTCTATGGAGAGGGTCATCGGAGGAAAATATAAAATCGGTCGGAAAATTGGGAGTGGATCATTCGGTGAAATTCATATTGGGGCGCATGTAGAAACCTCTGAGATTGTGGCCATCAAGATGGTGAGTCATAAATCTTTTATTATCGTGTCACTGGAAATTGTTACTTCAATTTTTGGCTTTTCGCCTGTTCCTGAAAAATTTTCTGAGAACAGGAAAACCCAACATCCGCAGCTACTGTATGAGGCCAAGATATATAATATTCTTCAAGGAGGAAGTGGTATTCCAAGAATAAAATGGTGTGGTACTGAACGAGACAACAACGTTCTAGTTATTGAACTTTTGGGACCAAGTCTTGAAGACCTCCTTTTCTTCTGTGGTGGGAAGTTTTCACTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTTACGAGGATAGAATATTTACATTCCAAGGGATTCCTGCATAGAGATATCAAACCGGATAACTTCCTTATGGGTCTTGGGAGGAAAGCAAATCAGGTTTTTATGATTGATTTTGGACTTGCAAAAGGATATAGGGACCCTTATACAAATAAACATATCCCTTACAGAGAGAACAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGCAATTCTCACAAAGGAATTGAGCAAAGTCGTCGAGATGATTTGGAGTCCCTTGGTTATGTTCTTATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGCAAGCTCCCACCAGAATGCAAAAATATGACAAAATTCGCAAAATGAAGTTATCAACTCCCACTGAGGTACTTTGCAAGTCATGTCCTGGGGAGTTTGCTTCTTACTTTCATTATTGCCACTCTTTGAAATTTGATCAAAGGCCAGAATATGGATTTTTGAAGCGCCTGTTTCGCAATTTGTTCACATGTCAAGGATATGATTCTGACTCTTTATTTGACTGGACAATTTTAAAATCTCAGCAGATGCAACAGGCAAAGACACAAACTCAATCAACTGCTCCAGTTGCTGTGCCTAGCACTCTTGAACCAGTGGATATGGATAAGCATAAAGAAGCCAATGATTCCACACCAAATGCCGTGGCAAAACCATCTTCAATCTATTGTGATCGTCCACGTGTTTGTGTGAAGATTAGGGCACCTAATGTTCAGAATCTCAATGGCAAGACTCTGAATGTTGGTTCATCTATTTCCTCTGCCATGCCCAGAGCCTCTACAGATAATATCTCACAACCCAGCAGGCCTGAAGAAACCTCAAACCCGGGTCACCTATTAGGGAGTAAATCCAGTGCTTCGGGCAGCTTTGTTCCTTCACTACGCCGAGTTTCATCAACCAAAGAGTAG 1368 0.4101 MASVSMERVIGGKYKIGRKIGSGSFGEIHIGAHVETSEIVAIKMVSHKSFIIVSLEIVTSIFGFSPVPEKFSENRKTQHPQLLYEAKIYNILQGGSGIPRIKWCGTERDNNVLVIELLGPSLEDLLFFCGGKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKANQVFMIDFGLAKGYRDPYTNKHIPYRENKNLTGTARYASCNSHKGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAPTRMQKYDKIRKMKLSTPTEVLCKSCPGEFASYFHYCHSLKFDQRPEYGFLKRLFRNLFTCQGYDSDSLFDWTILKSQQMQQAKTQTQSTAPVAVPSTLEPVDMDKHKEANDSTPNAVAKPSSIYCDRPRVCVKIRAPNVQNLNGKTLNVGSSISSAMPRASTDNISQPSRPEETSNPGHLLGSKSSASGSFVPSLRRVSSTKE. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02777 455 FunFam CK1 family protein kinase 67 365 - -
Seca8g02777 455 PANTHER CASEIN KINASE-RELATED 10 365 - -
Seca8g02777 455 MobiDBLite consensus disorder prediction 395 455 - -
Seca8g02777 455 SMART serkin_6 14 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02777 455 Pfam Protein kinase domain 73 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02777 455 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Seca8g02777 455 Gene3D Transferase(Phosphotransferase) domain 1 2 372 - -
Seca8g02777 455 ProSiteProfiles Protein kinase domain profile. 14 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02777 455 SUPERFAMILY Protein kinase-like (PK-like) 10 323 IPR011009 -
Seca8g02777 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02777 Seca-Chr8 75461498 75470476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02777 12 270 CBL-interacting serine-threonine protein kinases AT4G24400 27.203 2.75e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca8g02777 Pkinase 2.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02777 K08960 K08959 gmx:100782913 614.764