Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02776 ATGGCAAAAATCGCCTTAGGAACCACCCGAGAGGCCACTCAGCCTGATTGCATTCAAGCTCTAGTTGTTGAATTCATCGCCACCTTTCTCTTCGTCTTTGCTGGTGTTGGCTCTGCAATGGCCGCTGATAAGCTAAGTGGAGATGCACTAGTGGGCTTGTTTTTTGTGGCCGTGACACATGCACTTGTGGTGGCTGTGATGATTTCCGCCGCACATATTTCTGGTGGCCATCTGAATCCTGCCGTGACCCTAGGCCTCCTTGCCGGTGGCCACATCACCGTCTTCCGTTCCATCTTGTATTGGATTGATCAATTGGTAGCATCTGCAGCAGCATGTTATCTTCTTCATTACCTCTCAGGGGGATTGACAACTCCAGCTCATACCCTTGCAGAAGGAGTAGGGTACGGTCAGGGTATAGTTTGGGAGATTGTGTTGACCTTCTCATTGTTGTTCACTGTATACGCAACCATGGTCGATCCAAAGAAAGGAGCACTTGCTGGGCTTGGACCAACACTTGTTGGGTTTGTAGTAGGGGCTAACATCCTGGCTGGTGGGGCATTCTCTGCTGCTTCAATGAACCCAGCAAGATCTTTTGGGCCTGCCTTGGTTAGTGGTAACTGGACTGATCACTGGGTTTACTGGGTTGGACCCCTCATTGGTGGTGGCCTTGCTGGCTACATCTATGAGACTTTCTTCATTGACAGAACTCATGTTCCACTCACACAAGAAGTTTAA 735 0.4952 MAKIALGTTREATQPDCIQALVVEFIATFLFVFAGVGSAMAADKLSGDALVGLFFVAVTHALVVAVMISAAHISGGHLNPAVTLGLLAGGHITVFRSILYWIDQLVASAAACYLLHYLSGGLTTPAHTLAEGVGYGQGIVWEIVLTFSLLFTVYATMVDPKKGALAGLGPTLVGFVVGANILAGGAFSAASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGYIYETFFIDRTHVPLTQEV. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02776 244 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Seca8g02776 244 FunFam Probable aquaporin TIP1-1 2 244 - -
Seca8g02776 244 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Seca8g02776 244 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g02776 244 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g02776 244 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g02776 244 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g02776 244 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g02776 244 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g02776 244 Pfam Major intrinsic protein 13 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g02776 244 PANTHER AQUAPORIN-8 4 237 IPR034294 -
Seca8g02776 244 SUPERFAMILY Aquaporin-like 11 240 IPR023271 -
Seca8g02776 244 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02776 Seca-Chr8 75368458 75371364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02776 1 243 Major Intrinsic Protein MIP AT2G25810 78.601 4.53e-131 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02776 K09873 - gmx:100811447 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02776 8 75368458 75371364 Seca8g02776 8 75368458 75371364 ECH