Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02773 ATGAGAGTTCCAGTTTCAGGTGAAGCTCAGAATTCAGAAGCATCAGAAAGCAGCTCCAACTCATTCCCTTCGCCACCAAATGATAAAAAGGTAAAACGGAATCGAGAGTCTAACAAACACCCCGTGTATAGAGGTGTGAGGATGCGGAATTGGGGGAAATGGGTTTCTGAAATCCGTGAGCCAAGGAAGAAATCGAGAATATGGCTAGGGACATTCCCCACACCGGAAATGGCAGCGAGAGCACATGACGTGGCAGCGTTGAGCATCAAAGGAAGCTCTGCCATTCTCAACTTCCCTCACCTCGCCACTTGTTTCCCTCGTCCTGCTTCTTTGGCCCCTCGTGATGTTCAAGCAGCTGCTGCTAAAGCTGCTCAAATGGACAACTTCGAATTGCCTTCTTCTTCATCTTCAACGATGGATTTGTCTGCTGCTTCTGAAGAATTGAGTGAGATCATAGAGCTGCCAAGGTTGGAAAGTGGTTATGAGGTGGGGAAGGAGTTTGTGCTCATGGACTCGCATGATGCGTCATGGATGTATCAACCACCAATGCCGTGGTTGCTGCAGGATGATGCTGGTTGCAGTGGTGATGAATTTGCAGTTCCGGGGAGTGTTGGGGTTGTCACTAGTTTCGAGAGTTTCATGTGGTCAAATTATTAA 657 0.481 MRVPVSGEAQNSEASESSSNSFPSPPNDKKVKRNRESNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPHLATCFPRPASLAPRDVQAAAAKAAQMDNFELPSSSSSTMDLSAASEELSEIIELPRLESGYEVGKEFVLMDSHDASWMYQPPMPWLLQDDAGCSGDEFAVPGSVGVVTSFESFMWSNY. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02773 218 MobiDBLite consensus disorder prediction 1 42 - -
Seca8g02773 218 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Seca8g02773 218 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Seca8g02773 218 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Seca8g02773 218 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Seca8g02773 218 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Seca8g02773 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 159 - -
Seca8g02773 218 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Seca8g02773 218 MobiDBLite consensus disorder prediction 8 27 - -
Seca8g02773 218 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Seca8g02773 218 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Seca8g02773 218 MobiDBLite consensus disorder prediction 28 42 - -
Seca8g02773 218 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02773 Seca-Chr8 75252534 75253190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02773 11 192 AP2-EREBP Transcription Factor Family AT5G11590 57.843 2.33e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g02773 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02773 K09286 - gmx:100305349 241.506