Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02758 ATGGAAACACCAAAGATTTTCCAGAGCAGCTTTTTCCCCTCCGACAACAACAACAAGAGCAATAACGCTTCCGACCACTTTATCGTCGAGGATCTCTTCGACTTCTCCAACGACGCTATCATCACCGACTCCACTTTTGACTCTGTTCCATCCACCGACTCCTCCACCGTAACCGCTGTCGATAGCTGCAACTCCTCCTCTTTCTCTGTCTCTGACCCCAATTTTGTTGCGGATATTGGTTGCCGGAATCTCTCTGACGGCCATTTTTCTGGTGACCTCTGCGTTCCGCAGTATGATGACCTAGCGGAGCTGGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAGAAGCTGCAGCTGATATCAGGGGTGAAAGCTCGAAACGACGAAGCAGCATCAGTAGAGGCCCGCGAGTTCCCGTCCGAGCCCAACAGAAACAGCCCCATATTCAACACAGAGGTGTCGGTTCCAGCCAAGGCCCGCAGCAAGAGGACCCGTGGGCCGCCATGCAACTGGACTTCACGCCTCCTCGTCCTGTCACCAACGCCAACGACGTCGTCTCCCGACCCTGAAGTCGTCATTCCCACTCCTACCCTGCCCTCCGTTGCTGTTCCCGTCACCACAAAGAAGCCGGCAAAGGCAGCTCCGAGGAAGAAGGACGGCGGTGACAGCAGTGGCTCAGGGTCCGGCGACGGCCGCAAGTGCCTGCATTGCGCTACGGACAAGACGCCACAGTGGCGAACCGGGCCCATGGGTCCAAAGACTCTGTGCAACGCTTGCGGCGTGAGGTATAAGTCGGGCCGGTTGGTGCCGGAATACAGGCCCGCGGCGAGCCCAACGTTCGTGCTGACGAAGCACTCCAACTCGCACCGTAAGGTGCTGGAGCTGCGAAGGCAGAAGGAAATTGTGCGGTCCCAGCAGCACCAACAGCAGCCGTTCCTACAACATCATCACCATCAGAATATGGTGTTCGATATATCCAACGGTGATGATTACTTGATCCACCAACATGTTGGACCCGATTTTAGGCAGCTGATCTAG 1056 0.5597 METPKIFQSSFFPSDNNNKSNNASDHFIVEDLFDFSNDAIITDSTFDSVPSTDSSTVTAVDSCNSSSFSVSDPNFVADIGCRNLSDGHFSGDLCVPQYDDLAELEWLSNFVEESFSSEDLQKLQLISGVKARNDEAASVEAREFPSEPNRNSPIFNTEVSVPAKARSKRTRGPPCNWTSRLLVLSPTPTTSSPDPEVVIPTPTLPSVAVPVTTKKPAKAAPRKKDGGDSSGSGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEIVRSQQHQQQPFLQHHHHQNMVFDISNGDDYLIHQHVGPDFRQLI. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02758 351 PIRSF Txn_fac_GATA_plant 7 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca8g02758 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 298 - -
Seca8g02758 351 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Seca8g02758 351 Gene3D - 233 284 IPR013088 GO:0006355|GO:0008270
Seca8g02758 351 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Seca8g02758 351 FunFam GATA transcription factor 231 316 - -
Seca8g02758 351 PANTHER GATA TRANSCRIPTION FACTOR 16 314 - -
Seca8g02758 351 MobiDBLite consensus disorder prediction 162 239 - -
Seca8g02758 351 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Seca8g02758 351 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Seca8g02758 351 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02758 Seca-Chr8 74225591 74227479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02758 27 351 C2C2-Gata Transcription Factor Family AT5G25830 54.464 1.47e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca8g02758 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02758 - - zju:107420464 445.662