Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02749 ATGCCTCAACTCCGAAACAGAAACAGGGCAACGCTCCATAACTCAAATCCAAACCAAAACCCGAATCCGATCACCCAACCCGAAAAAACAACCCACCAGAGGAGGAGGAGAAGAACTATCACACCAGCAAGAAATAGCAACACGATCGCAGGTAACGAAATTGATAACCCCCTTGTAAACAACAACGAAGCCAATAAAGTAGAACAACAACAACAACACGCACCTCCGCTTAGGGTTTCAAAAACCATGGATGACGACTACGACAGCGGTGGCCGGAGCGCCGATAAGGCCCCTGCCGCCGAAGACGAAGGAAGCACGGCTCCCCTTCCCGAAAAGGTACAGGTAGGTGGTTCCCCGTTGTACAGAGTAGAGAGGAAACTTGGGAAGGGAGGGTTTGGACAAGTCTACGTTGGTCGGCGCGTCGGAGCCGGTGGCGGAGCCTTAGAGGTAGCTTTGAAATTTGAGCATAAAAGTAGTAAGGGATGCAATTATGGACCTCCTTATGAGTGGCAAGTTTACAATGCATTAGGTGGTAGTCATGGAGTTCCACGAGTTCATTACAAGGGACGGCAAGCAGATTACTATGTTATGGTCATGGATATGCTGGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCAGCAGAGATGGTGGCATGTATAGCAATTGAGGCTATATCCATATTAGAGAAAATGCATTCTAGAGGATATGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGCACCCCGGGAACTCATGATGAGAAAAAGCTTTTTCTTGTTGATCTTGGGTTAGCAACCCGTTGGCGTGATAATTCAACCGGCCTTCATGTTGAGTATGATCAACGTCCAGATGTATTTAGGGGAACAGTTCGTTATGCTAGTGTGCATGCTCATCTCGGTAGAACAAGTAGCAGGAGAGATGATTTGGAATCTCTTGCGTACACACTAATCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAGAAGATGGCCACCTCCCCTGAAAATTTGTGTAGCTATTGTCCTCCACCTTTTCGGCAATTTGTTGAGTGCGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCACTTTTTGATGGAATTGTTAGTCCAAATCCAGACATTAGACCCATAAATACTGATGGTGCGCAGAAGCTTATATATCAGGTTGGACAAAAGAGAGGACGATTGACCATGGAAGAAGATGATGATGAGCAACCAAAAAAGAAGGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCTCGCCGACCAATGAAGCAAAGGTACCATTACAATGTTGCTGATGTGCGGCTGTCTCAACACATTGAGAAGGGATATGAGGATGGGTTATTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCTGCTTTCTTCACAAGGAATGGATTATGGAACAATGGGAAAAGAATTATTACATTAGTGCCATAGCAGGAGCTACTAATGGGAGCTCATTGGTTGTAATGTCCAGAGGGACCCAATACTTGCAGCAGTCCTATAAGGTCAGTGATTCATTTCCATTCAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTATGTGACTGCTATGGCTACTGCTGGAAGTAAATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGAAAATGGTTACCGCATCACTTCAACTGCTGCTACATGGGACCAAGCTGCTTTTGTTCTTAGTATTCCAAGAAGAAAACCGGCTGATGAAACTCAAGAGACACTCAGAACATCTGCCTTTCCTAGTACTCATGTCAAGGACAAATGGGCAAAGAACCTCTATATTGCATCTATTTGCTATGGGAGAACAGTTTCATGA 2046 0.4423 MPQLRNRNRATLHNSNPNQNPNPITQPEKTTHQRRRRRTITPARNSNTIAGNEIDNPLVNNNEANKVEQQQQHAPPLRVSKTMDDDYDSGGRSADKAPAAEDEGSTAPLPEKVQVGGSPLYRVERKLGKGGFGQVYVGRRVGAGGGALEVALKFEHKSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQADYYVMVMDMLGPSLWDVWNNNSHTMSAEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTHDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENLCSYCPPPFRQFVECVVNLKFDEEPNYAKYISLFDGIVSPNPDIRPINTDGAQKLIYQVGQKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVYELSSCFLHKEWIMEQWEKNYYISAIAGATNGSSLVVMSRGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSKWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWENGYRITSTAATWDQAAFVLSIPRRKPADETQETLRTSAFPSTHVKDKWAKNLYIASICYGRTVS. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02749 681 ProSiteProfiles Protein kinase domain profile. 121 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02749 681 Pfam Protein kinase domain 121 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02749 681 SUPERFAMILY Protein kinase-like (PK-like) 121 398 IPR011009 -
Seca8g02749 681 PANTHER CASEIN KINASE-RELATED 114 651 - -
Seca8g02749 681 MobiDBLite consensus disorder prediction 1 28 - -
Seca8g02749 681 MobiDBLite consensus disorder prediction 42 77 - -
Seca8g02749 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Seca8g02749 681 Gene3D Transferase(Phosphotransferase) domain 1 90 442 - -
Seca8g02749 681 MobiDBLite consensus disorder prediction 79 99 - -
Seca8g02749 681 FunFam casein kinase 1-like protein HD16 94 437 - -
Seca8g02749 681 CDD STKc_CK1 121 390 - -
Seca8g02749 681 SMART serkin_6 121 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02749 681 MobiDBLite consensus disorder prediction 1 114 - -
Seca8g02749 681 ProSitePatterns Protein kinases ATP-binding region signature. 127 153 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02749 Seca-Chr8 73904753 73909545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02749 84 348 AGC Kinase Gene Family AT3G08730 22.846 3.00e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca8g02749 Pkinase 3.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02749 - - zju:107420390 1163.67