Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02733 ATGACGACCGTTTTCTCAGGTTCCCGATTTATACTCAAATTTAGCTCGCATTCAAACGCTAACCTGAGGAGTACAGCTAGGGTTTCCAATGGCGGTGTAGTTCGCTTCCCATTATCTGCATCGAGCGCTTTCGTCATTCAAAAAGGAGACATCACCAAATGGTCCATTGATGGTTCAACAGATGCAATAGTAAATCCTGCAAACGAGAGAATGCTTGGAGGTGGTGGTGCGGACGGAGCTATACATAGGGCTGCAGGCCCAGATCATCTTCAAGCATGCCAAAATGTTGCACAAGTTCGGCCGGGAGTTCGTTGCCCAACGGGGGAAGCAAGGATTACACCAGGTTTTATGCTGCCTGCTTCTCATGTTATTCATACTTTTGGCCCAATCTTCAATGCTGATAATAATCCTGCGGCCTCTCTAGCAAGTACTTACAGGTAG 441 0.4717 MTTVFSGSRFILKFSSHSNANLRSTARVSNGGVVRFPLSASSAFVIQKGDITKWSIDGSTDAIVNPANERMLGGGGADGAIHRAAGPDHLQACQNVAQVRPGVRCPTGEARITPGFMLPASHVIHTFGPIFNADNNPAASLASTYR. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02733 146 SUPERFAMILY Macro domain-like 37 146 IPR043472 -
Seca8g02733 146 ProSiteProfiles Macro domain profile. 31 146 IPR002589 -
Seca8g02733 146 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 16 146 - -
Seca8g02733 146 Gene3D Leucine Aminopeptidase, subunit E, domain 1 13 146 IPR043472 -
Seca8g02733 146 Pfam Macro domain 64 146 IPR002589 -
Seca8g02733 146 SMART YBR022w_8 43 146 IPR002589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02733 Seca-Chr8 72668492 72669395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02733 41 134 C2H2 Transcription Factor Family AT5G01310 35.514 1.22e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02733 K23518 - gmx:100811169 223.016