Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02726 ATGGCTTCTTCTTCCTTAAAGGTGCTCAGTCGAAGAAGGACCCATCCTCCCAAATCTTCATGCCCTAACGACGTCGTCTGCGAGGAATGCGGCTCCGGTCACTCCCCGGCCAAGTTGCTTCTGTGCGACAAATGCGACCGAGGTTACCATCTATTCTGCCTCAGACCCATCCTTCCTTCTGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCCACGACACCAACCCCAAACCCAAATCTTTTCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATTCAACGTTCCTCGGTTGCATCCCTGATTTCGAATCAAGACACCCGGAAGAAGCGAAAGCGGTGTAGTAGCTTAGTGGTGTCCAAAAAGAAGAGGAAACTGTTGCCCTTCATCCCAAGTGAGGATCCTAAAAGGAGATTAGAACAGATGGCATCACTCGCGACGGCGCTGACTGCGACCAAAACAGAATTCAGCAATGAGCTTAACTACATGCCTGGAATGGCCCCAAGGTCTGCTAATCGTCCTGCTCTGGAGCATGGTGGAATGCAGGTGATTAACTTTGTGCATTGTCTCATTCTGCATTTTCATTATTTGGACAGGAATAATATATCACAAAGTTTATCATAA 630 0.4825 MASSSLKVLSRRRTHPPKSSCPNDVVCEECGSGHSPAKLLLCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSHDTNPKPKSFPLVQTKIIDFFRIQRSSVASLISNQDTRKKRKRCSSLVVSKKKRKLLPFIPSEDPKRRLEQMASLATALTATKTEFSNELNYMPGMAPRSANRPALEHGGMQVINFVHCLILHFHYLDRNNISQSLS. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02726 209 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g02726 209 CDD PHD_RSF1 27 71 - -
Seca8g02726 209 Pfam PHD-finger 27 73 IPR019787 -
Seca8g02726 209 ProSiteProfiles Zinc finger PHD-type profile. 24 74 IPR019787 -
Seca8g02726 209 SUPERFAMILY FYVE/PHD zinc finger 17 79 IPR011011 -
Seca8g02726 209 PANTHER OS02G0192300 PROTEIN 13 127 - -
Seca8g02726 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Seca8g02726 209 ProSitePatterns Zinc finger PHD-type signature. 27 71 IPR019786 -
Seca8g02726 209 Gene3D SET domain 113 205 IPR046341 -
Seca8g02726 209 SMART PHD_3 26 72 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02726 Seca-Chr8 72398842 72399875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02726 23 71 C2H2 Transcription Factor Family AT3G01460 46.939 1.32e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g02726 PHD 2.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02726 K24406 - gmx:100775247 268.085