Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02700 ATGAACATTTTTCAGTTCTTCAAAGGATACTTGGAAGGTCGTAGGTACAGAAATGGATGGCCAGAGATGCTGAAGCTAAAGGATTGGCCTCCATCAAATTCTTTTGAAGAGTGTTTTCCAAGGCACGGTGCCGAGTTTACAGCTATGCTTCCTTTTAGTGACTACACCCATCCCAAATCTGGTATTTTAAATCTTGCGACAAAGCTCCCTGCTGTTTTGAAGCCAGATTTGGGCCCCAAAACATACATTGCTTATGGATCTTTAGAAGAATTAAGTAGAGGTGATTCTGTGACAAAACTACATTGTGACATTTCAGATGCGGTCAATATTCTGACACACACAGCTGATGTAAAGACACCACCATGGCAACCCAGAATCATAAAAAAGTTGCAGAAAAAGTATGAAGCTGAAGATTTGCGTGAGCTTTATGGCATGAATGATAAGGTAGTTGGTTCACATGGAAGAAAACAGAAAAAGTGTCGTGTAGGTATTAGCATGGATCCTAAAATCCATGAAAAAGAAGACATTATTGGGAGAGACTCAACCTCACTTGGAAGTCAAGGAAAAGAAGAGAATGTTAATGGACAACTAAGTAGATTACAGAGTTTAGGGAAATCAAGATCAGATAGGGCCGCTTGTGTTCAAGGATTCTCAGAATCCACCATAAGTAAATCATTATTAAATTCTGGTGAGCAGGCAATCCTCAATTTGAATACAGGGTTTCCAGAATTTAATCTCAATAATCATGATTCCAGTTGCTTGTTTCCAGGAAAAGATTGTGAGTGGATGGATTATAAAGTGAATAATGGTGAAAAATGGTGCTCATCACCAGGTGATGAATCTTGTAAAGGAACATCATTACCAGAACGTATGGAGTTTAGGACATGCACAGATGAAGATTTTGAAAAGGGAAGAATATTTGATATGCACCTAAGTAAAGAAAAATTTTGTTCCCTCCAAGATCAATCTGATACAGGTTCCTTATTTGTTGATTTGAACTTCCCCACTCCACCAGACAGGGTAAATCAGGAACATCAGAGAAATTGCATTGAACAATCTCAGTCCAAAAGCAGATGCATGTGTTGTAAGGAAGAACCCTCCCCCTTTGGGAAGAATGTTTCTGATTTACTCTCCCCTCAGAAGCAACACTCATGCCTTCAATCCTTTCCTGTTTGTGAAAATATGGCTGACAGTAATAGCATTTTTAAGGATGGGACAGATGCAGGTCATGACTTACTTCTTCATGAATCTTATATACAAGATCCTGATAATGATACTGAAAGACATCCAAACACCAGTAAAAGTAAGCAGCCTTGTACTGGAACAAAAGAAACAAAATTTGACAATGGATTGAATTCTTCAGTCATGCCATGTTCAGAGATGAAAACTGACAAGATAGAGTCAGTTAAAAATGACATATCAAGTAATAATTTCTTTAAAAATGATGATCATTTAGAGAATCAATGTGGGAGTGCTGTGTGGGACATATTCCGTAGGCAGGATGTACCCAAGCTAATGGAGTACCTAAAGAAACACCACAGAGAATTTCGCCACATAAATAGTCTTCCAGTTAATTCTGTGATTCATCCCATCCATGACCAGATCCTTTATTTAAATGAGAAGCATAAAAAGCAACTAAAGCAAGAGTATGGTGTTGAACCGTGGACGTTTGAGCAACACCTTGGGGAGGCTGTTTTTATACCTGCAGGATGCCCACATCAAGTGAGAAACAGAAAGTCTTGCATAAAAGTGGCTCTGGACTTTGTTTCACCTGAGAATGTTCAGGAATGCATTCGATTGACAGAGGAATTTCGATTACTTCCAAAAAACCATAGATCTAAGGAAGACAAATTGGAGATAAAGAAGATGGCACTCTATGCAACTGATTTTGCTATAACTGAAGCCACCAAACTGATGGAAGGAGAATGA 1929 0.3862 MNIFQFFKGYLEGRRYRNGWPEMLKLKDWPPSNSFEECFPRHGAEFTAMLPFSDYTHPKSGILNLATKLPAVLKPDLGPKTYIAYGSLEELSRGDSVTKLHCDISDAVNILTHTADVKTPPWQPRIIKKLQKKYEAEDLRELYGMNDKVVGSHGRKQKKCRVGISMDPKIHEKEDIIGRDSTSLGSQGKEENVNGQLSRLQSLGKSRSDRAACVQGFSESTISKSLLNSGEQAILNLNTGFPEFNLNNHDSSCLFPGKDCEWMDYKVNNGEKWCSSPGDESCKGTSLPERMEFRTCTDEDFEKGRIFDMHLSKEKFCSLQDQSDTGSLFVDLNFPTPPDRVNQEHQRNCIEQSQSKSRCMCCKEEPSPFGKNVSDLLSPQKQHSCLQSFPVCENMADSNSIFKDGTDAGHDLLLHESYIQDPDNDTERHPNTSKSKQPCTGTKETKFDNGLNSSVMPCSEMKTDKIESVKNDISSNNFFKNDDHLENQCGSAVWDIFRRQDVPKLMEYLKKHHREFRHINSLPVNSVIHPIHDQILYLNEKHKKQLKQEYGVEPWTFEQHLGEAVFIPAGCPHQVRNRKSCIKVALDFVSPENVQECIRLTEEFRLLPKNHRSKEDKLEIKKMALYATDFAITEATKLMEGE. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02700 642 MobiDBLite consensus disorder prediction 433 454 - -
Seca8g02700 642 Gene3D Cupin 417 614 - -
Seca8g02700 642 Gene3D Cupin 1 171 - -
Seca8g02700 642 ProSiteProfiles JmjC domain profile. 46 605 IPR003347 -
Seca8g02700 642 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 639 IPR045109 GO:0032454|GO:0033169
Seca8g02700 642 SMART cupin_9 39 605 IPR003347 -
Seca8g02700 642 SUPERFAMILY Clavaminate synthase-like 14 632 - -
Seca8g02700 642 FunFam Transcription factor jumonji (JmjC) domain-containing protein 423 614 - -
Seca8g02700 642 Pfam JmjC domain, hydroxylase 484 588 IPR003347 -
Seca8g02700 642 MobiDBLite consensus disorder prediction 421 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02700 Seca-Chr8 65969419 65974553 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca8g02700 JmjC 2.1e-19 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02700 K15601 - gmx:100800662 967.992