Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02699 ATGGATTTGCAAAGATTGGGGCCTTCCGATCCAGGTGGTTCTTCCCGTCGCTCCACCGCTCCTCTAACCAAATCAACCACTTCCTCTCCATCAGGAAGCAAAAAGAGGCTCATCATGCTCTCTATCCTCGCCGGAGTCTTAATCGTCGCCTCCGCCATCTCCGCGGTTCTCGTCACCGTCATCCGCTCCCACGGCAATCAAAACCCACCGAACCTCCACGGCAAACCCACCCAGGCAATCTCCCGAACCTGCAGCAAGACCAGATTCCCCACTCTTTGCATCAACTCCCTCCTCGACTTCCCAGGCTCCACCACCGCTTCGGAGCAAGACCTCGTCCACATCTCCTTCAACATGACCCTCCGCCACGTCAGCAGAGCATTGTATGCCTCCGCCGGCCTTTCCTTCGCCGCTGAAGACCCGCGAGTCCGTGCCGCCTACGACGACTGCCTGGAGCTCCTCGACGAGTCCATGGACGCGCTGGAAAGGTCCCTCGCATCCATCTCGGCTTCATCCCAGGACGTGGGGTCCACCGAGGATGTGATGACGTGGCTGAGCGCTGCGCTCACCAACCAGGACACGTGTGCGGAAGGCTTTGAGGACACCAGCGGGAGCCTCAAGGACCAGATGGCTAATAATTTGAAGGACTTGTCTGAACTCGTCAGCAATTGTCTCGCGATATTCTCGGCGAGTGGAAATGGTGATTTCTCCGGTGTACCCATACAGAACAAAAGAAGAAGAAGATTGATGGGAACGGAAGAGGAAGGAGAATTTATTAATACCGCCGAGAAATTTCCAAAATGGCTGAATAAACGAGATAGGAGATTGTTGAGTTCACCCGTATCGGCGATACAAGCCGATATCATCGTGTCCAAGAGTGGTAACGGAACAGTGAAGACAATCGCCGAGGCCATTAAGAAAGCGCCAGAGCATAGTAACCGCCGCTTCATAATCTACGTGAGGGCAGGAAGGTATGAAGAGAATAACTTAAAGGTGGGGAAAAAGAAAACTAACCTTATGTTCATAGGAGACGGGAAGGGTAAAACTGTCATCACAGGGAAGAAAAATGTTGTAGATGGAATGACCACTTTCCATACCGCATCTTTCGCTGCTAGTGGTGCTGGTTTCATTGCACGAGACATCACGTTCGAGAACTACGCCGGAGCGGCAAAGCACCAAGCGGTGGCTCTCCGTGTGAGTGCAGACCACGCGGTGGTGTTCCGATGCAACATTTTGGGGTACCAAGATTCATGCTATGTGCATTCCAACCGTCAATTCTTCCGTGAATGTAACATTTACGGCACCGTGGACTTCATATTCGGCAACGCTGCTGTGGTTTTCCAAAAGTGCAACCTTTACGCTCGTAAGCCCATGGCCCAACAGAAGAACACCATCACGGCTCAAAATAGGAAAGACCCGAATCAGAATACGGGTATATCCATCCACGACTGTCGGATCTTACCCGCCCCAGATCTCGCCCCGGTGAAGGACAGCATCCCAACTTATCTGGGCCGTCCATGGAAAATGTACTCTAGAACCGTGTACATGTTGTCCTACATAGGTGATCACGTGCATCCTAATGGATGGTTGGAGTGGGATGGGGACTTTGCTTTAGACACGTTGTATTATGGTGAGTACATGAATTATGGGCCGGGTGCAGGAATCGAGAAACGGGTCAAATGGCGTGGGTACCGGGTCATTACTTCTACCGTTGAGGCTAACAGGTTCACAGTGTCCCAATTTATATCCGGGTCCTCCTGGTTACCGTCAACTGGAGTGGCGTTTTTGGCCGGGTTATCCACCTGA 1803 0.5219 MDLQRLGPSDPGGSSRRSTAPLTKSTTSSPSGSKKRLIMLSILAGVLIVASAISAVLVTVIRSHGNQNPPNLHGKPTQAISRTCSKTRFPTLCINSLLDFPGSTTASEQDLVHISFNMTLRHVSRALYASAGLSFAAEDPRVRAAYDDCLELLDESMDALERSLASISASSQDVGSTEDVMTWLSAALTNQDTCAEGFEDTSGSLKDQMANNLKDLSELVSNCLAIFSASGNGDFSGVPIQNKRRRRLMGTEEEGEFINTAEKFPKWLNKRDRRLLSSPVSAIQADIIVSKSGNGTVKTIAEAIKKAPEHSNRRFIIYVRAGRYEENNLKVGKKKTNLMFIGDGKGKTVITGKKNVVDGMTTFHTASFAASGAGFIARDITFENYAGAAKHQAVALRVSADHAVVFRCNILGYQDSCYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNLYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLAPVKDSIPTYLGRPWKMYSRTVYMLSYIGDHVHPNGWLEWDGDFALDTLYYGEYMNYGPGAGIEKRVKWRGYRVITSTVEANRFTVSQFISGSSWLPSTGVAFLAGLST. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02699 600 ProSitePatterns Pectinesterase signature 2. 431 440 IPR033131 -
Seca8g02699 600 SMART PMEI_2 75 226 IPR006501 GO:0004857
Seca8g02699 600 MobiDBLite consensus disorder prediction 1 32 - -
Seca8g02699 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 228 IPR035513 -
Seca8g02699 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 229 IPR035513 -
Seca8g02699 600 Pfam Plant invertase/pectin methylesterase inhibitor 79 226 IPR006501 GO:0004857
Seca8g02699 600 NCBIfam pectinesterase inhibitor domain 62 227 IPR006501 GO:0004857
Seca8g02699 600 MobiDBLite consensus disorder prediction 11 32 - -
Seca8g02699 600 PANTHER PECTINESTERASE 52 588 - -
Seca8g02699 600 SUPERFAMILY Pectin lyase-like 281 597 IPR011050 -
Seca8g02699 600 FunFam Pectinesterase 76 230 - -
Seca8g02699 600 CDD PMEI-like_3 84 229 - -
Seca8g02699 600 FunFam Pectinesterase 280 598 - -
Seca8g02699 600 Pfam Pectinesterase 286 583 IPR000070 GO:0030599|GO:0042545
Seca8g02699 600 Gene3D - 280 598 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02699 Seca-Chr8 65916552 65921185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02699 1 599 Carbohydrate Esterase AT5G53370 64.463 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02699 - - gmx:106796002 964.911