Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02685 ATGATAATTAAAAAGAACCTGAAATCCGAAATGCCGAGTCTGAAACGGCACAGACTCGGCGACTCGGAGGACGACGAGTCCGCCTCGGCGACTCGGAAGGACAAGAAGAGAAAGACGAACGAGCAATACCGGTTGAATCTCCTCGCCGGCGCAATTCCCGCGAACGTACTCGGCGCGGTGGAGCCGGAGAAGGGCTTCCTGACACCGCTCAACTCGAAGGAGGAGCATGGAGCCGACAAGAAGAACGTGTCGAGGCCACCGGTGGTTCGGAGCTCGCGCGGCCGTGCGCAGGTGCTGCCGTCGCGGTTCAACGATTCGGTTATGGACGATTGGAGGAAGGACAGCAAGAGCGTCACTAACATACCTGCATTCGACGAAGAGCTCGGTTTAAAAGCAACGAAAACTTGCAGCGGTAAAAGGAAGAACGCAGAGAGAACAACCGGCCACAAGCCTGGGAGGTATTCCGTTTTGTGCGAGGAGGTGCTGCATAAGAATTTCAGTGCTGCAGCGAGCAAGGACTTGAGTTTACGCAAGGAGTTTATGGTTTGTAAAGGTAATGAGGGAGTTTTGAAGAAGGAGGAGAAGAAAGATGGATCGAATGGACCCCAAGACTTTTATGCGGGTGATATAGTGTGGGCCAAGGCAGGGAAGAATCAACCTTTTTGGCCTGCCATTGTCATTGATCCTATGTCTCAGGCACCTGAGCAGGTCTTGAGGTCATGTATAGCTGATGCTGCTTGTGTGATGTTTCTTGGGTACTCTGAGAATAAAAATCACAGGGACTATGCATGGCTGAAATATGGGACGATTTTTCCATTTCTGGATTATACAGACAGGTTTCAGGAGCAGCCTGAATTGAGTGACTGTAATATTTCTGAATTTCAAACCGCAATGGAGGAGGCGATCATGGCAGATCAGGGTTTTACAGAGAACCTGATAGCAGAGATAAATGCAGCAGCTGCTAACACTGGTTCCCGTGATTTCCTGAATCTGAAGCAGGAATGTGATAAGAAAAACTCACAACCTTGTGAAGTATGTGGATTGGACCTTCCATTAAAAATGTCAAAGAAAACAAAGGATTTGAATCCTGGTGGTCAATTCCTATGTAAAAAATGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGTAAGAAAATTTGGAATCATTCAGATAGCGGAAGTTGGCTGCGCTGTGATGGATGTCAAGGGTGGGTGCATGCCGAATGCGACAAAATATCCAGCAACATTTTCAAGAATCTTGGAGGCACTGATTATTTTTGCCCTACTTGCAAAGTGAAGTTTAGTTTTGAGTTATCTTATTCAGAAAAATCACAGCCTAAAGTCAAATGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTAACCTAGTTGAGTGCAAGTGTGGTTTTTGTGAGACTGAAAAGCAAGCACTTGCTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAATTGGAGAACAAGTATTCAGATTAAAGGATCCATGCAATCGCTGGAACAATGGATGCTGCAAGTGGCAGAGTTTCATGCTAATGCTGTAGTTTCTGTCAAACCTAAAAAACCTTCCGTAAAAGAAAGGAAACAGAAGTTGCTTTCCTTTCTGCAAGAGAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAGGATTGGGACTACAACAAAATTATCATCTGCATTAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGCAAAGCTTGTGAAACACCCGAGATCAATCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCGGTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTTTGAGTATTCCATCAAATTCTTTTGTGAAGGTTTGTGTTATTTGTAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGCTCCACTTATTTCCATGCCATGTGTGCATCTAGGGCTGGTTATCGCATGGAGTTATTACCAGTCACCTTTGTAGAACTTCACCTTCCATTCCTGTTGCATTGTTCGGAGAAAAATGGTAAACAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGAGTCATTTCAACCAAAAGTCTTATCCAAACTAAGAAAAAGACTGGGTCGAGGTTAATTTCATCAAACAGAAAAAAGGTAAAAGACACTCCTCCTGCAGACACTGGACATGACCCTTTTTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAACCTTACAAAAAAGAGAGCAGCAGATGAAGCCATTGCTCATCAAGTGAGGGGTTACTACCATCATCCTTTAGATGCAATACGGAGTTTAAATCCTAGCAAAGTGGTAAATGAGTCCCAGGCATTTTCTTCTTTTAGGGAACGCCTTTATCACTTACAGAGAACCGAAAATGAACGTGTTTGCTTTGGTAGATCAGCCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGGGGCAGCATTGCAGATCTAAGGGAGGCGCGATATAGATTAGAAGGAAAAGACTGCTATCTATTCAAGATAAGTGAAGAAGTGGTAGTTGATGCCACTGAAAAAGGAAATATAGCGCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGAGGAGAGCCGGATTGTGCTCATTGCCAAGACTGACGTTTCTGCTGGAGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCTTGTTTATGTAAATCTCCAAACTGCCGGAAATTCATGAATTAG 3066 0.4384 MIIKKNLKSEMPSLKRHRLGDSEDDESASATRKDKKRKTNEQYRLNLLAGAIPANVLGAVEPEKGFLTPLNSKEEHGADKKNVSRPPVVRSSRGRAQVLPSRFNDSVMDDWRKDSKSVTNIPAFDEELGLKATKTCSGKRKNAERTTGHKPGRYSVLCEEVLHKNFSAAASKDLSLRKEFMVCKGNEGVLKKEEKKDGSNGPQDFYAGDIVWAKAGKNQPFWPAIVIDPMSQAPEQVLRSCIADAACVMFLGYSENKNHRDYAWLKYGTIFPFLDYTDRFQEQPELSDCNISEFQTAMEEAIMADQGFTENLIAEINAAAANTGSRDFLNLKQECDKKNSQPCEVCGLDLPLKMSKKTKDLNPGGQFLCKKCARLTKSKHYCGICKKIWNHSDSGSWLRCDGCQGWVHAECDKISSNIFKNLGGTDYFCPTCKVKFSFELSYSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLNLVECKCGFCETEKQALAEWERHTGSKFRNWRTSIQIKGSMQSLEQWMLQVAEFHANAVVSVKPKKPSVKERKQKLLSFLQEKYEPVCAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGARNVRDFTSWVCKACETPEINRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVGFASDEKMEPALGILSIPSNSFVKVCVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELLPVTFVELHLPFLLHCSEKNGKQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLIQTKKKTGSRLISSNRKKVKDTPPADTGHDPFSAARCRIFQRTNLTKKRAADEAIAHQVRGYYHHPLDAIRSLNPSKVVNESQAFSSFRERLYHLQRTENERVCFGRSAIHGWGLFARRNIQEGEMVLEYRGEQVRGSIADLREARYRLEGKDCYLFKISEEVVVDATEKGNIARLINHSCMPNCYARIMSVGDEESRIVLIAKTDVSAGDELTYDYLFDPDEPDEFKVPCLCKSPNCRKFMN. 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02685 1021 SUPERFAMILY FYVE/PHD zinc finger 380 438 IPR011011 -
Seca8g02685 1021 MobiDBLite consensus disorder prediction 69 95 - -
Seca8g02685 1021 SMART set_7 879 1002 IPR001214 GO:0005515
Seca8g02685 1021 Pfam SET domain 890 995 IPR001214 GO:0005515
Seca8g02685 1021 ProSiteProfiles Extended PHD (ePHD) domain profile. 627 756 IPR034732 -
Seca8g02685 1021 SUPERFAMILY FYVE/PHD zinc finger 574 638 IPR011011 -
Seca8g02685 1021 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1021 IPR025780 -
Seca8g02685 1021 CDD PHD_TCF19_like 382 432 - -
Seca8g02685 1021 ProSitePatterns Zinc finger PHD-type signature. 576 621 IPR019786 -
Seca8g02685 1021 CDD PHD_ATX3_4_5_like 575 621 IPR042011 -
Seca8g02685 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 624 IPR013083 -
Seca8g02685 1021 ProSiteProfiles PWWP domain profile. 207 276 IPR000313 -
Seca8g02685 1021 Gene3D - 199 308 - -
Seca8g02685 1021 PANTHER PHD FINGER PROTEINS 42 453 - -
Seca8g02685 1021 FunFam Histone-lysine N-methyltransferase 625 758 - -
Seca8g02685 1021 SMART PHD_3 381 433 IPR001965 -
Seca8g02685 1021 SMART PHD_3 575 622 IPR001965 -
Seca8g02685 1021 SMART PHD_3 686 756 IPR001965 -
Seca8g02685 1021 Pfam PHD-finger 588 622 - -
Seca8g02685 1021 Pfam PWWP domain 208 303 IPR000313 -
Seca8g02685 1021 CDD ePHD_ATX3_4_5_like 630 755 IPR041955 -
Seca8g02685 1021 CDD PWWP_AtATX3-like 206 310 - -
Seca8g02685 1021 MobiDBLite consensus disorder prediction 69 83 - -
Seca8g02685 1021 FunFam Histone-lysine N-methyltransferase 854 1021 - -
Seca8g02685 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 436 IPR013083 -
Seca8g02685 1021 ProSiteProfiles SET domain profile. 879 996 IPR001214 GO:0005515
Seca8g02685 1021 MobiDBLite consensus disorder prediction 1 41 - -
Seca8g02685 1021 CDD SET_SETD1-like 866 1017 - -
Seca8g02685 1021 SUPERFAMILY Tudor/PWWP/MBT 201 304 - -
Seca8g02685 1021 Pfam PHD-zinc-finger like domain 629 752 - -
Seca8g02685 1021 Pfam PHD-finger 381 434 IPR019787 -
Seca8g02685 1021 ProSiteProfiles Post-SET domain profile. 1005 1021 IPR003616 -
Seca8g02685 1021 Gene3D SET domain 780 1021 IPR046341 -
Seca8g02685 1021 SMART PostSET_3 1005 1021 IPR003616 -
Seca8g02685 1021 SUPERFAMILY SET domain 872 1018 IPR046341 -
Seca8g02685 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 757 IPR013083 -
Seca8g02685 1021 ProSiteProfiles Zinc finger PHD-type profile. 379 435 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02685 Seca-Chr8 63151808 63162161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02685 576 712 C2H2 Transcription Factor Family AT3G14740 37.241 7.02e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g02685 zf-HC5HC2H_2 9.4e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02685 - - gmx:100808761 1549.26