Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02675 ATGGGCAATGAAGTGGGAACCATGGGCAAAATCCACCATGTCAATGTCGTTCGCTTGCTTGGCTTTTGCGCTGATGGATTTCACCGCGCTTTAGTTTATGACTTTTTCCAAAATGGTTCGCTGCAGAAATTCATTTCTCCACCCAACAACAAGGATACCTTTCTTGGATGGGAAAAGTTGCAACAAATTGCTCTGGGCATAGCCAAAGGAATTGAGTATCTCCACCAAGGTTGTGATCAAAGAATTCTTCACTTTGACATCAATCCTCATAACGTCTTGCTAGATGACACTTTCACACCCAAAATTTCAGACTTTGGATTGGCTAAGCTCTGCTCCAAAAATCGAAGCACTGTATCCATGACTGCAGCAAGGGGAACATTAGGCTACATGGCACCTGAAGTTTTTTCTAGAAACTTTGGCAATGTGTCTTACAAGTCTGATATCTACAGTTATGGGATGTTGTTGCTAGAGATGGTTGGAGGAAAAAAGAATGTTGAGACAAGTAAAGACAATTTCAAAGTTCTATATCCAGATTGGATACACAGTTTGCTTGATGGAGGAGACATACATATTCCTATGGATGAAGAGGGAGATTTCAGAATTGCAAAGAAACTGGCTATTGTGGGACTTTGGTGTATCCAGTGGCATCCAGTACATCGCCCTTCCATGAAAACTGTGATGCAAATGCTCCAAGGAGAGGGAGACAACTTGAAAGTTCCCAGAAACCCCTTCGAGCCTACAGCTTTAACAAGTACCAGCGCTAATACTGCTTCTGCAGGACGTCTCAATTTGGAGCTGGATGATTCAAGAATTAGATTAGATTGA 825 0.4218 MGNEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFQNGSLQKFISPPNNKDTFLGWEKLQQIALGIAKGIEYLHQGCDQRILHFDINPHNVLLDDTFTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGKKNVETSKDNFKVLYPDWIHSLLDGGDIHIPMDEEGDFRIAKKLAIVGLWCIQWHPVHRPSMKTVMQMLQGEGDNLKVPRNPFEPTALTSTSANTASAGRLNLELDDSRIRLD. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02675 274 Pfam Protein kinase domain 3 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02675 274 ProSiteProfiles Protein kinase domain profile. 1 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02675 274 Gene3D Transferase(Phosphotransferase) domain 1 37 241 - -
Seca8g02675 274 Gene3D Phosphorylase Kinase; domain 1 1 36 - -
Seca8g02675 274 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 251 IPR045874 GO:0004672
Seca8g02675 274 SUPERFAMILY Protein kinase-like (PK-like) 3 230 IPR011009 -
Seca8g02675 274 FunFam PR5-like receptor kinase 36 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02675 Seca-Chr8 62598470 62599294 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02675 3 252 Receptor kinase-like Gene Family AT1G66910 49.416 7.76e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02675 Pkinase 3.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02675 - - tpra:123893290 454.521