Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02672 ATGTCGATGAAAATACTAACATATTCATTGTTAATGGTGCTGCTTATGAAGCTTGGGAGTGCTCAAAATGGATGTCCCTTCCGTCTAACTTGTACACAGAATAAGAAAATGCTTGAGCTGCCTGCAGTTCCCGTGCCTGTAAAACTCCTCGTCAGCGACATTGATTACGGAACGCGAACATTAGAAGCACATGACCCCGAAAACTGTCTTCCGCGACTCTTTCTAAGGCTCAACTATTCATCATTTTATCCTTTCTCGGGGGTTGATTACGGCTATGGAGACCGGAACAATATTAGTTTCTTTGATTGTTCTTCTGTGGGGAAACGACATCTGAGAAACAACTATCAAATACAAGACGATGCGCAAGATATGTTATCTTGCCCAATTTATGCTGCTGACGATTTCGATGGTATCATTGACACGGACCTAGTATCCTGCACCAAACTGTTTGAGTTTGACCGCGTTTTGCCAGTACCAGCATATGAAATACAGAGGAACTCACTCAGCCTGGGGTGGTCGGATACAAATTTTGATAGATCATGCTTTGACTGTAAGCACAAATCAAAGAAGAAGACTACGTCCATTCTTTTAGCCACTGCAGGTGTAATTGTTGGTTCTACAGTGGTGGCGCTTTTGCTAGCTGCTATCATTCGAAAATATCGCTATTTTCGGATGAAAGGCGAGGATCATGCAAGAGTCGAAAACTTTTTGAAGGACTACAGAGCTTTAAAGCCAACCAGATTCTCTTATGCTGATATCAAGAGAATTACACATCAATTCAAGGAAAAGTTAGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAATTATCCACTGAAATTCTGGTTGCTGTCAAGGTCCTCAACAACACAGAAGGAGATGGAACTGAGTTCATAAATGAAGTGGGAACCATGGGCAAAATCCACCATGTCAATGTCGTTCGCTTGCTTGGCTTTTGCGCTGATGGATTTCACCGCGCTTTAGTTTATGACTTTTTCCAAAATGGTTCGCTGCAGAAATTCATTTCTCCACCCAACAACAAGGATACCTTTCTTGGATGGGAAAAGTTGCAACAAATTGCTCTGGGCATAGCCAAAGGAATTGAGTATCTTCACCAAGGTTGTGATCAAAGAATTCTTCACTTTGACATCAATCCCCATAACGTCTTGCTAGATGACACTTTCACACCCAAAATTTCAGACTTTGGATTGGCTAAGCTCTGCTCCAAAAATCGAAGCACTGTATCCATGACTGCAGCCAGGGGAACATTAGGCTACATGGCACCTGAAGTTTTTTCTAGAAACTTTGGCAATGTGTCTTACAAGTCTGATATCTACAGTTATGGGATGTTGATGTTAGAGATGGTTGGAGGAAAAAAGAATGTTGAGACAAGTAAAGACAATTTCCAAGTTCTATATCCAGATTGGATACACAGTTTGCTTGATGGAGGAGACATACATATCCCTATGGATGAAGAGGGAGATTTCAAAATTGCAAAGAAACTGGCTATTGTGGGACTTTGGTGTATCCAGTGGCATCCAGTGCATCGCCCTTCCATGAAAACTGTGATGCAAATGCTCCAAGGAGAGGGAGACAATTTGAAAGTTCCAAGAAACCCCTTCGAGCCTACAGCTTTAACAAGTACCAGCGCTAATACTGCTTCTGCAGGACGTCTCAATTTGGAGCTGGAAGTGATTCAAGAATTAGATTAG 1713 0.4209 MSMKILTYSLLMVLLMKLGSAQNGCPFRLTCTQNKKMLELPAVPVPVKLLVSDIDYGTRTLEAHDPENCLPRLFLRLNYSSFYPFSGVDYGYGDRNNISFFDCSSVGKRHLRNNYQIQDDAQDMLSCPIYAADDFDGIIDTDLVSCTKLFEFDRVLPVPAYEIQRNSLSLGWSDTNFDRSCFDCKHKSKKKTTSILLATAGVIVGSTVVALLLAAIIRKYRYFRMKGEDHARVENFLKDYRALKPTRFSYADIKRITHQFKEKLGEGAHGAVYKGKLSTEILVAVKVLNNTEGDGTEFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFQNGSLQKFISPPNNKDTFLGWEKLQQIALGIAKGIEYLHQGCDQRILHFDINPHNVLLDDTFTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLMLEMVGGKKNVETSKDNFQVLYPDWIHSLLDGGDIHIPMDEEGDFKIAKKLAIVGLWCIQWHPVHRPSMKTVMQMLQGEGDNLKVPRNPFEPTALTSTSANTASAGRLNLELEVIQELD. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02672 570 Gene3D Transferase(Phosphotransferase) domain 1 333 537 - -
Seca8g02672 570 FunFam serine/threonine-protein kinase PBS1-like 226 332 - -
Seca8g02672 570 ProSitePatterns Protein kinases ATP-binding region signature. 264 286 IPR017441 GO:0005524
Seca8g02672 570 PANTHER RUST RESISTANCE KINASE LR10-RELATED 229 548 IPR045874 GO:0004672
Seca8g02672 570 SUPERFAMILY Protein kinase-like (PK-like) 241 527 IPR011009 -
Seca8g02672 570 Gene3D Phosphorylase Kinase; domain 1 233 332 - -
Seca8g02672 570 ProSiteProfiles Protein kinase domain profile. 258 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02672 570 Pfam Protein kinase domain 260 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02672 570 FunFam PR5-like receptor kinase 333 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02672 Seca-Chr8 62534847 62536775 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02672 19 549 Receptor kinase-like Gene Family AT1G66910 36.655 9.37e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02672 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02672 - - tpra:123893290 782.326