Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02670 ATGTATGGAGATATTGAAGACTTTCTACAAGGGAACACTCTCATGCCAATAAGGTATTCATTCAAAGAGATAAAGAAGATGACTAAAAATTTTAAGTACAAATTGGGTGAAGGAGGCTATGGCTCTGTTTATAAAGGAAAGCTACGCAGTGGACCTTTTGTAGCCATAAAAATGTTGGGTAAAGCTAAGGCTAATGGACAAGAATTCATCAGTGAAGTTGCAACAATAGGAAGAATACACCATGCTAATGTGGTGCGACTTATTGGATTTTGTGCTGAGGGGTCAAAACGTGCTCTGGTTTATGAATTCATGCCCAATGGTTCTTTGGATAGATATATTCTGTCCAAAAATGATAGTACACCTTTAACTTATGAGCAAATGTATGAGATATCCCTTGGAGTGGCTCGTGGTATTGCTTATCTGCATCAAGGTTGTGACATTCAAATTTTGCATTTTGACATCAAGCCCCATAACATCCTTCTTGATGACAACTTCAATGCTAAGGTTTCAGACTTCGGTCTTGCAAAGCTTTATCCTATTGACAATAGCATTGTCACATTGACAGCAGCAAGAGGAACAATTGGTTACATGGCTCCAGAATTGTTCTACCAAAATATTGGAGGAATTTCCTATAAGGCTGATGTCTATAGCTTTGGTATGCTTTTGATGGAAATGGCAAGCAGGAGAAGAAACTTGAATCCTCATGCAGATAATTCAAGCCAGCTTTTCTTTCCCTTTTGGATTTACAATCAATTGAATGAAGAAAAGGAGATAGAAATGGAAGAAGTTACATATGAAGGAAAGAATAGTAGTGTGAAGAAAATGTTCTTAGTTGCACTATGGTGTATACAATTGAAACCCACTGATCGTCCTTCAATGAACAAAGTAATTGAGATGCTCGAAGGAGATGTTGAAAGCATTGAAATGCCTCCAAAGCCTTCTCTCTATCCAACAGAAATGATTCAAAGAGACCTTGAAACAAACTCTGAACCAAGTGTGTCAGATGATGCTGCATATGCTCTTAGTTAG 1029 0.3771 MYGDIEDFLQGNTLMPIRYSFKEIKKMTKNFKYKLGEGGYGSVYKGKLRSGPFVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLIGFCAEGSKRALVYEFMPNGSLDRYILSKNDSTPLTYEQMYEISLGVARGIAYLHQGCDIQILHFDIKPHNILLDDNFNAKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLMEMASRRRNLNPHADNSSQLFFPFWIYNQLNEEKEIEMEEVTYEGKNSSVKKMFLVALWCIQLKPTDRPSMNKVIEMLEGDVESIEMPPKPSLYPTEMIQRDLETNSEPSVSDDAAYALS. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02670 342 ProSiteProfiles Protein kinase domain profile. 29 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02670 342 FunFam PR5-like receptor kinase 104 312 - -
Seca8g02670 342 CDD STKc_IRAK 35 302 - -
Seca8g02670 342 Pfam Protein kinase domain 32 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02670 342 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 321 IPR045874 GO:0004672
Seca8g02670 342 Gene3D Phosphorylase Kinase; domain 1 8 103 - -
Seca8g02670 342 FunFam serine/threonine-protein kinase PBS1-like 4 103 - -
Seca8g02670 342 Gene3D Transferase(Phosphotransferase) domain 1 104 315 - -
Seca8g02670 342 SMART serkin_6 29 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02670 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Seca8g02670 342 ProSitePatterns Protein kinases ATP-binding region signature. 35 57 IPR017441 GO:0005524
Seca8g02670 342 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02670 Seca-Chr8 62514251 62515279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02670 14 315 Receptor kinase-like Gene Family AT4G18250 50.000 5.66e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02670 Pkinase 9.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02670 - - aip:107605707 540.806