Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02669 ATGGAAAGGGAAGCCACATGCTTCTGTTCCTCACACGCACACACACTAGTGTCAATATTTGCTACAATCCTTCTCCTATTGCAACAAAATTGCCTCGCTAAGAAGCATCATCCACCATGCCCTCCTTCTTCATGCGGCAAAATCCACAACATTTCTTATCCATTCCGACTCAAAGGCGATCCAAGCTACTGTGGAGACCCAAGGTACCAATTAGATTGCGAGAACAACGGGACATTATTGTTGAATTTGTTCTCAGGGAAATACTATGTTCAAGACATTGATTACAAGAGGTACAAAATCCTATTGAGTGATGCAGGTGCAGTGGAGGATGCTAATTGCTCTTTCATCCCTCGCTATTTTCTCTACGATCGCAGTTTCAATGCACGCAGTTTCAAGGAGCTTGTTGGTCCAGATGATTTTGGATTAGAGCCGTTTATTTTGGACCCTATCGATCCTCCGCGAATAGCATATTTCAACTGTGTCAATCCAATCACCAATGATCCTCGATACGTGAAGGTGGATACCAGTCGATGTGGGACCCGAGGACATGTTTATGCAGTTGCGGAACCATCGTTGTTAGAGTATCACAAGGGGGACATTAAGGTTGGGTGCGAACTTATGGTGGCTACTTTGGGTAGTAGTAGGAGCTTGCCGGAGATTCAAAAGAGGAACGTGTCTTATGATGAAATCCATAGGATGATAATTGAAGGAGTTGAGGTGTCGTGGTTACCTGTGATCTGTGAAGATCGGTGTGGAAAGAGGACCAAATGCGAGGTTATCAATGAATCTAATGGAGAAGTCCAATGTGATAGGCACTACTGTCATTATGCCTACCAGACAACCGATAAATGCGGACTTCCGCAACAAATTATTGGTTATACTCGAGCTTATCTTAGAGGCATTATTTTTGGACTTCTGAGTAGAATAACATTTAGCACAAAGCAATTGGATAACCCAGTTGGACTACAATATTTTGATGGAGGAATTTTCATAGGACGAAATGTTATACCAGTAATTGTGGCAGTCAGATATGTGTTTGGAGTTGCACTTCTCCTTACGCTATTCATCTATAAGTGGCGACGAAGACATTTGTCAGTGTATGAAAACATTGAAAACTTTCTGGTAGAGAGCAATCTCAATCCCATTAGGTACGAGTACAAAGAAATCAAGAAAATGACCGGAGGTTTCAAAGTTAAATTGGGTCAAGGAGGCTTCGGATCCGTATACAAAGGAAAGCTCAGAAGTGGATTGGATGTAGCAGTGAAGATATTGACCAAATCCAATGCTAATGGACAAGACTTTATTAGTGAGGTAGCAACCATTGGAAGAATACATCATGTGAATGTGGTACGTCTTATTGGATATTGTGTTCATGGAAAAAAACGTGCTCTGGTTTACCAATTCATGCCTAATGGGTCATTGGATAAATACATTTTCTCTAAAGATGGAAGTGCCCCTTTAAGTTATGAGAAAATATATGAAATAGCTCTTGGAATAGCTCGTGGGATAGCATATCTGCATCAAGGCTGTGATATGCAAATTCTACATTTTGACATCAAGCCTCATAATATTCTTCTAGATGACAATTTCATTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTATATCCTGTGAATGATAGCATTGTCACTTTAACTGCAGCAAGGGGAACTTTGGGTTACATGGCTCCAGAATTGTTCTATAAAAATATTGGAGGGATCTCTTATAAGGCTGATGTGTATAGCTTTGGAATGCTTTTGATGGAAATGGCAGGTAGGAGGAGAAACTCAAATCCTCATGCAGAGCATTCAAGCCAAGTTTACTTCCCCTTTTGGATCCATGATCAATTTAAAGAAGAAAAAGATGTTGGAATATTGGAAGATGCCTCAGAAGAGGAAAAGATTCAAGTAAAAAGGATGTTCATAGTTGCACTTTGGTGTATTCAATTGAAACCGAGTGATCGTCCTTCAATGAACAAGGTAGTGGAGATTCTTGAAGGGAAAGCTGAAAGCCTTGAAATGCCTCCAAGGCCTTCTTTTTATCCAAATGAAACAATAGGACATAATGATGAAATCAACTCTGACCAAACATCTTGGAGTGATTCATCTAGTTCTGATATGTATCTTACTGAAACTCGTAACTAA 2145 0.4019 MEREATCFCSSHAHTLVSIFATILLLLQQNCLAKKHHPPCPPSSCGKIHNISYPFRLKGDPSYCGDPRYQLDCENNGTLLLNLFSGKYYVQDIDYKRYKILLSDAGAVEDANCSFIPRYFLYDRSFNARSFKELVGPDDFGLEPFILDPIDPPRIAYFNCVNPITNDPRYVKVDTSRCGTRGHVYAVAEPSLLEYHKGDIKVGCELMVATLGSSRSLPEIQKRNVSYDEIHRMIIEGVEVSWLPVICEDRCGKRTKCEVINESNGEVQCDRHYCHYAYQTTDKCGLPQQIIGYTRAYLRGIIFGLLSRITFSTKQLDNPVGLQYFDGGIFIGRNVIPVIVAVRYVFGVALLLTLFIYKWRRRHLSVYENIENFLVESNLNPIRYEYKEIKKMTGGFKVKLGQGGFGSVYKGKLRSGLDVAVKILTKSNANGQDFISEVATIGRIHHVNVVRLIGYCVHGKKRALVYQFMPNGSLDKYIFSKDGSAPLSYEKIYEIALGIARGIAYLHQGCDMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPVNDSIVTLTAARGTLGYMAPELFYKNIGGISYKADVYSFGMLLMEMAGRRRNSNPHAEHSSQVYFPFWIHDQFKEEKDVGILEDASEEEKIQVKRMFIVALWCIQLKPSDRPSMNKVVEILEGKAESLEMPPRPSFYPNETIGHNDEINSDQTSWSDSSSSDMYLTETRN. 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02669 714 ProSitePatterns Protein kinases ATP-binding region signature. 400 422 IPR017441 GO:0005524
Seca8g02669 714 Gene3D Phosphorylase Kinase; domain 1 370 468 - -
Seca8g02669 714 FunFam serine/threonine-protein kinase PBS1-like 365 468 - -
Seca8g02669 714 Pfam Wall-associated receptor kinase galacturonan-binding 40 104 IPR025287 GO:0030247
Seca8g02669 714 SMART serkin_6 394 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02669 714 CDD STKc_IRAK 400 667 - -
Seca8g02669 714 MobiDBLite consensus disorder prediction 673 714 - -
Seca8g02669 714 PANTHER RUST RESISTANCE KINASE LR10-RELATED 367 686 IPR045874 GO:0004672
Seca8g02669 714 Gene3D Transferase(Phosphotransferase) domain 1 469 675 - -
Seca8g02669 714 Pfam Protein kinase domain 398 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02669 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Seca8g02669 714 SUPERFAMILY Protein kinase-like (PK-like) 378 666 IPR011009 -
Seca8g02669 714 FunFam PR5-like receptor kinase 469 677 - -
Seca8g02669 714 MobiDBLite consensus disorder prediction 686 714 - -
Seca8g02669 714 ProSiteProfiles Protein kinase domain profile. 394 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02669 Seca-Chr8 62499160 62505420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02669 383 698 Receptor kinase-like Gene Family AT5G38280 51.553 3.09e-105 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02669 Pkinase 9.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02669 - - gmx:100820366 1081.63