Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g02668 | ATGTTCGACACGCTGCAAACTTTAAAGACACCCTCTTGTGTCTTCATAACAATCTCAGGCTGCAAATCATTTCTCGCCTGCAAGACATACCACACAATGGCCAGTTTTCAGAATTTTTCTCTTCTGTTAGCTGTTATTTTTCTGCTAGGGAAGCCTGTGATAGGCAAGAGTCCGTGCACAGATAAATGTGGACGCGTTCCCATTCAGTTCCCCTTTTATCTCAGAAATAGCAAGTTGAATCACACCACCGGCAATCCTCGTGGGTTTGATCTATCATGTAACGATAGAGATGAGACTGTGCTGGAGTTACCTGCTGTTCCGGTAAAACTGTTTGTCAAAGACATAGACTACCAATCTCAGCAAATTCAAATCTATGATCCTAGAAACTGCCTTTCCAGTCAGCTTTTTACCATAGGAAATTCATCAATTTCTCCCTTCCAATTCCAATTCCAGTCATTTGGAAGAAGTAATAATGTTTCCTTCTTCCGTTGCGATTCAAAGTCATGTCCGATTTTGGCACTTTCATCTGGCGAAGACTTCATTGATCCTGGAATAGTTTCTTGTACCAAGGTGAGTGATGTTTTGTCTGTAGGGTGGAGGAATAACATGATGGATGACAACAGTTTGATTATTGAATGGTCCAATCCTAACTGTAGTTACTGTGAAGCAAAAGGGCATAAATGTAAATGGAAGAATGGTACCCAAGGTGAAACCGAATGCTTCGTTTGCTCAACAAACAAGATTTCAACATCAACTGTATTACTCATTACTGCAGGGGCAATTGGTGGTTTGATGATTTTAACGCTATTGGTCATTGCATTGCTTCACATCTATCGCTATTTTAAGATGAAAGGAGAAGACTTTGCTAGGATTGAAAAATTCTTGGAGGATTATAGGGCAATGAAGCCTACAAGATTCACTTATTCTGATATTAAGAGAATCACAAATGGTTTCAAGGAGAGGTTAGGGGAAGGTGCTCATGGAGCAGTGTTCAAAGGCATGCTCTCCCAAGAAATTCTAGTGGCTGTGAAGGTACTCAATGAAACAGAAGGAGATGGGAAGGATTTCATAAATGAAGTGGGAACCATGGGCAAAATTCATCATGTCAATGTTGTTCGCTTGCTTGGATTTTGCGCAGATGGATTCCACCGTGCTCTTGTCTATGATTTCTTTCCAAACGGTTCATTGCAGAAATTCTTAGCTCCACCAGACAATAAGGATGTGTTCCTTGGCTGGGAGAAGTTGCAACAGATTGCTGTTGGTGTTGCCAGGGGGATTGAGTATCTCCATCTTGGTTGTGATCATAGAATACTTCACTTTGATATCAATCCCCACAATGTGTTACTAGATGACCACTTCACCCCCAAAATTACTGATTTTGGACTTGCCAAATTGTATCCCAAAAATCAGAGCACTGTATCTATGACTGCTGCCAGGGGAACCTTGGGTTACATTGCACCTGAAGTTTTCTCAAGAAACTTTGGTAATGTGTCTTATAAGTCTGACATTTACAGCTATGGAATGTTGCTGCTGGAGATGGTTGGTGGAAGAAAGAATACAAATGTGTCAGCTGAGGAAACTTTGCAAGTTTTATATCCAGAATGGATCCATAACTTGCTTGAAGGTAAAGACATACAAGTTAATATTGAGGATGAGGGAGATGTTGCAATTGCAAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAATGGAATCCAGTGGATCGTCCGTCCATGAAAACTGTCGTACAAATGCTTCAAGGAGAGGGAGACAAGTTAATTCCACCCCCTACTCCTTTTGACTCAACTAGTGCTACTAGAACAAATGCAATTATTCCAGCTAGACATCTGAATTTCGAGTTGGAAGTTATTCCGGAAATAGAGTAA | 1887 | 0.4081 | MFDTLQTLKTPSCVFITISGCKSFLACKTYHTMASFQNFSLLLAVIFLLGKPVIGKSPCTDKCGRVPIQFPFYLRNSKLNHTTGNPRGFDLSCNDRDETVLELPAVPVKLFVKDIDYQSQQIQIYDPRNCLSSQLFTIGNSSISPFQFQFQSFGRSNNVSFFRCDSKSCPILALSSGEDFIDPGIVSCTKVSDVLSVGWRNNMMDDNSLIIEWSNPNCSYCEAKGHKCKWKNGTQGETECFVCSTNKISTSTVLLITAGAIGGLMILTLLVIALLHIYRYFKMKGEDFARIEKFLEDYRAMKPTRFTYSDIKRITNGFKERLGEGAHGAVFKGMLSQEILVAVKVLNETEGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQKFLAPPDNKDVFLGWEKLQQIAVGVARGIEYLHLGCDHRILHFDINPHNVLLDDHFTPKITDFGLAKLYPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSAEETLQVLYPEWIHNLLEGKDIQVNIEDEGDVAIAKKLAIVGLWCIQWNPVDRPSMKTVVQMLQGEGDKLIPPPTPFDSTSATRTNAIIPARHLNFELEVIPEIE. | 629 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g02668 | 628 | FunFam | PR5-like receptor kinase | 391 | 595 | - | - | |
Seca8g02668 | 628 | Pfam | Protein kinase domain | 319 | 584 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca8g02668 | 628 | Gene3D | Transferase(Phosphotransferase) domain 1 | 391 | 593 | - | - | |
Seca8g02668 | 628 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 287 | 602 | IPR045874 | GO:0004672 | |
Seca8g02668 | 628 | SUPERFAMILY | Protein kinase-like (PK-like) | 298 | 586 | IPR011009 | - | |
Seca8g02668 | 628 | ProSiteProfiles | Protein kinase domain profile. | 316 | 594 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca8g02668 | 628 | Gene3D | Phosphorylase Kinase; domain 1 | 291 | 390 | - | - | |
Seca8g02668 | 628 | ProSitePatterns | Protein kinases ATP-binding region signature. | 322 | 344 | IPR017441 | GO:0005524 | |
Seca8g02668 | 628 | FunFam | serine/threonine-protein kinase PBS1-like | 287 | 390 | - | - | |
Seca8g02668 | 628 | Pfam | Wall-associated receptor kinase galacturonan-binding | 59 | 126 | IPR025287 | GO:0030247 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g02668 | Seca-Chr8 | 62474519 | 62477150 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g02668 | 215 | 599 | Receptor kinase-like Gene Family | AT1G66910 | 44.146 | 2.21e-101 | 321 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRK10L-2 | Seca8g02668 | Pkinase | 3.4e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g02668 | - | - | gmx:100819302 | 942.184 |