Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02668 ATGTTCGACACGCTGCAAACTTTAAAGACACCCTCTTGTGTCTTCATAACAATCTCAGGCTGCAAATCATTTCTCGCCTGCAAGACATACCACACAATGGCCAGTTTTCAGAATTTTTCTCTTCTGTTAGCTGTTATTTTTCTGCTAGGGAAGCCTGTGATAGGCAAGAGTCCGTGCACAGATAAATGTGGACGCGTTCCCATTCAGTTCCCCTTTTATCTCAGAAATAGCAAGTTGAATCACACCACCGGCAATCCTCGTGGGTTTGATCTATCATGTAACGATAGAGATGAGACTGTGCTGGAGTTACCTGCTGTTCCGGTAAAACTGTTTGTCAAAGACATAGACTACCAATCTCAGCAAATTCAAATCTATGATCCTAGAAACTGCCTTTCCAGTCAGCTTTTTACCATAGGAAATTCATCAATTTCTCCCTTCCAATTCCAATTCCAGTCATTTGGAAGAAGTAATAATGTTTCCTTCTTCCGTTGCGATTCAAAGTCATGTCCGATTTTGGCACTTTCATCTGGCGAAGACTTCATTGATCCTGGAATAGTTTCTTGTACCAAGGTGAGTGATGTTTTGTCTGTAGGGTGGAGGAATAACATGATGGATGACAACAGTTTGATTATTGAATGGTCCAATCCTAACTGTAGTTACTGTGAAGCAAAAGGGCATAAATGTAAATGGAAGAATGGTACCCAAGGTGAAACCGAATGCTTCGTTTGCTCAACAAACAAGATTTCAACATCAACTGTATTACTCATTACTGCAGGGGCAATTGGTGGTTTGATGATTTTAACGCTATTGGTCATTGCATTGCTTCACATCTATCGCTATTTTAAGATGAAAGGAGAAGACTTTGCTAGGATTGAAAAATTCTTGGAGGATTATAGGGCAATGAAGCCTACAAGATTCACTTATTCTGATATTAAGAGAATCACAAATGGTTTCAAGGAGAGGTTAGGGGAAGGTGCTCATGGAGCAGTGTTCAAAGGCATGCTCTCCCAAGAAATTCTAGTGGCTGTGAAGGTACTCAATGAAACAGAAGGAGATGGGAAGGATTTCATAAATGAAGTGGGAACCATGGGCAAAATTCATCATGTCAATGTTGTTCGCTTGCTTGGATTTTGCGCAGATGGATTCCACCGTGCTCTTGTCTATGATTTCTTTCCAAACGGTTCATTGCAGAAATTCTTAGCTCCACCAGACAATAAGGATGTGTTCCTTGGCTGGGAGAAGTTGCAACAGATTGCTGTTGGTGTTGCCAGGGGGATTGAGTATCTCCATCTTGGTTGTGATCATAGAATACTTCACTTTGATATCAATCCCCACAATGTGTTACTAGATGACCACTTCACCCCCAAAATTACTGATTTTGGACTTGCCAAATTGTATCCCAAAAATCAGAGCACTGTATCTATGACTGCTGCCAGGGGAACCTTGGGTTACATTGCACCTGAAGTTTTCTCAAGAAACTTTGGTAATGTGTCTTATAAGTCTGACATTTACAGCTATGGAATGTTGCTGCTGGAGATGGTTGGTGGAAGAAAGAATACAAATGTGTCAGCTGAGGAAACTTTGCAAGTTTTATATCCAGAATGGATCCATAACTTGCTTGAAGGTAAAGACATACAAGTTAATATTGAGGATGAGGGAGATGTTGCAATTGCAAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAATGGAATCCAGTGGATCGTCCGTCCATGAAAACTGTCGTACAAATGCTTCAAGGAGAGGGAGACAAGTTAATTCCACCCCCTACTCCTTTTGACTCAACTAGTGCTACTAGAACAAATGCAATTATTCCAGCTAGACATCTGAATTTCGAGTTGGAAGTTATTCCGGAAATAGAGTAA 1887 0.4081 MFDTLQTLKTPSCVFITISGCKSFLACKTYHTMASFQNFSLLLAVIFLLGKPVIGKSPCTDKCGRVPIQFPFYLRNSKLNHTTGNPRGFDLSCNDRDETVLELPAVPVKLFVKDIDYQSQQIQIYDPRNCLSSQLFTIGNSSISPFQFQFQSFGRSNNVSFFRCDSKSCPILALSSGEDFIDPGIVSCTKVSDVLSVGWRNNMMDDNSLIIEWSNPNCSYCEAKGHKCKWKNGTQGETECFVCSTNKISTSTVLLITAGAIGGLMILTLLVIALLHIYRYFKMKGEDFARIEKFLEDYRAMKPTRFTYSDIKRITNGFKERLGEGAHGAVFKGMLSQEILVAVKVLNETEGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQKFLAPPDNKDVFLGWEKLQQIAVGVARGIEYLHLGCDHRILHFDINPHNVLLDDHFTPKITDFGLAKLYPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSAEETLQVLYPEWIHNLLEGKDIQVNIEDEGDVAIAKKLAIVGLWCIQWNPVDRPSMKTVVQMLQGEGDKLIPPPTPFDSTSATRTNAIIPARHLNFELEVIPEIE. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02668 628 FunFam PR5-like receptor kinase 391 595 - -
Seca8g02668 628 Pfam Protein kinase domain 319 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02668 628 Gene3D Transferase(Phosphotransferase) domain 1 391 593 - -
Seca8g02668 628 PANTHER RUST RESISTANCE KINASE LR10-RELATED 287 602 IPR045874 GO:0004672
Seca8g02668 628 SUPERFAMILY Protein kinase-like (PK-like) 298 586 IPR011009 -
Seca8g02668 628 ProSiteProfiles Protein kinase domain profile. 316 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02668 628 Gene3D Phosphorylase Kinase; domain 1 291 390 - -
Seca8g02668 628 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Seca8g02668 628 FunFam serine/threonine-protein kinase PBS1-like 287 390 - -
Seca8g02668 628 Pfam Wall-associated receptor kinase galacturonan-binding 59 126 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02668 Seca-Chr8 62474519 62477150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02668 215 599 Receptor kinase-like Gene Family AT1G66910 44.146 2.21e-101 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02668 Pkinase 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02668 - - gmx:100819302 942.184